BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944022
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38100.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 981 0.0
> AT4G38100.1 | Symbols: | unknown protein; LOCATED IN: chloroplast
thylakoid membrane; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G01150.1); Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr4:17886869-17888204 REVERSE LENGTH=773
Length=773
Score = 981 bits (531), Expect = 0.0
Identities = 597/628 (95%), Gaps = 8/628 (1%)
Strand=Plus/Plus
Query 1 TTTGATGCGTCCGTACGAAAATGGAGCTCTGCACCAGGTCAACCACCGTCATCACTCATC 60
|||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 8 TTTGATGCATCCGTACGAAAATGGAGCTCTGCACCAGGTCTACCACAATCATCACTCATC 67
Query 61 TCCCTTG-GAGCATCAACGGCCATGGATATCTAGCGGGGAAATCTGTTCATAGAATCTCA 119
|||| || |||| ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 68 TCCC-TGCGAGCTTCAACGGCCATGGATATCTAGCGGGAAAATCTGTTGATAGAATCT-- 124
Query 120 CTACTTCCTCTCCATCGAAACGTTGCGTCTCTCGTTCTTCAATCCCGCACGTTGCGTTGT 179
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 C-ACTTCCTCTCCAGCGAAACGTTGCGTCTCTCGTTCTTCAATCCCGCACGTTGCGTTGT 183
Query 180 AGTAGAAAGTTTCCAGGAGAAACAGTTTCTGAAGAAACATCAACAGGAGTCAATGAGTTT 239
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 184 AGTAGAAAGTTTCCAGGAGAAACAGTTACTGAAGAAACATCAACAGGAGTCAATGAGTTT 243
Query 240 GGTCTGGAGGATCGTGATGGAGTAGTTGTTGCAGTCGAAGAG-AAAACTTCGAATAGTGA 298
||| |||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||
Sbjct 244 GGTGTGGAGGATCGTGATGGAGTAGTTGTTGCAGCCGAAGAGAAAAAC-TCGAATAGTGA 302
Query 299 AGCTTCTCAAGCTGAAGATGACCAAACTCAAGCCCTAGAGTTCTTGAACGATATTAAGCT 358
|||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 303 AGCTCCTCAAGCTGAAGATGAGGAAACTCAAGCCCTAGAGTTTTTGAACGATATTAAGCT 362
Query 359 GGACTCAGGCAAGACGTATTCAATCTTGCTCTATGGGAGTGGTGCAATAGTTGCTCTCTA 418
|||||||| |||||| ||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 363 GGACTCAGACAAGACATATTCAATCCTGCTCTATGGGAGTGGTGCGATAGTTGCTCTCTA 422
Query 419 CTTAACTTCTGCAATCGTCAGTTCACTCGAAGCAATCCCTCTGTTTCCTAAGCTAATGGA 478
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 CTTAACGTCTGCAATCGTCAGTTCACTCGAAGCAATCCCTCTGTTTCCTAAGCTAATGGA 482
Query 479 AGTGGTTGGTCTCGGATACACACTCTGGTTCACTACCCGTTATCTGCTATTTAAGAGGAA 538
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 AGTAGTTGGTCTCGGATACACACTCTGGTTCACTACCCGTTATCTGCTATTTAAGAGGAA 542
Query 539 CAGAGAAGAACTCAAGACAAAAGTTAGTGAAATCAAAAAGCAGGTTCTTGGGTCTGATAG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 543 CAGAGAAGAACTCAAGACAAAAGTTAGTGAAATCAAAAAGCAGGTTCTTGGGTCTGATAG 602
Query 599 TGAGTGAGTAGTTTTGCTA-TTTTATTT 625
|||||||||||||||||| |||| |||
Sbjct 603 TGAGTGAGTAGTTTTGCTTCTTTTTTTT 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30140488200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5