BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944024
Length=1055
Score E
Sequences producing significant alignments: (Bits) Value
AT5G23910.1 | Symbols: | ATP binding microtubule motor family ... 435 6e-121
> AT5G23910.1 | Symbols: | ATP binding microtubule motor family
protein | chr5:8068452-8072991 FORWARD LENGTH=2374
Length=2374
Score = 435 bits (235), Expect = 6e-121
Identities = 357/412 (87%), Gaps = 23/412 (6%)
Strand=Plus/Plus
Query 188 TCGAAA-ATTCATATAAATTGGACTATTGCTACAAAGAAAACAGAATC-ACAGGTTCAAT 245
|||||| ||||||||| |||||||||||||||| ||||||| ||| | || ||||||||
Sbjct 151 TCGAAAGATTCATATAGATTGGACTATTGCTACGAAGAAAA-TGAAACTACTGGTTCAAT 209
Query 246 TCT-ATCAAAGGAGATAAAGCCTCTTATCTCTACTGTCTTTGAGGGTAAAGATGCTAATG 304
||| | | |||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 210 TCTCA-CTAAGGAGATAAAGCCTCTTATATCTACTGTCTTTGAGGGTAAAGATGCGAATG 268
Query 305 TCATCGCCCACAGAGCACGAAATTGCAGAAAAACACATCTCATACATGTATTGAAAGCAA 364
||||||||||| ||||| ||||| | | ||||||||||| ||||| | | | ||
Sbjct 269 TCATCGCCCACGGAGCAAGAAATAGTGGTAAAACACATCTGATACA-G----G---G-AA 319
Query 365 TCCCATTA-AGGGAGCTTGGTTTAACCGTTCTTACAATGTCTGAGATACTATCCATGGCT 423
|| | ||||| ||||||||| | || ||||||||||||||||| |||||||||||
Sbjct 320 ----ATGAGAGGGAACTTGGTTTAGCTGTCCTTACAATGTCTGAGATGTTATCCATGGCT 375
Query 424 GAGGAAAGAGGAGACTCAG-TTTCTGTATCAGTTTACGAGGTTTCTCAGGAAACCGTGTA 482
||||||||||||||| | | ||| |||||||||||||||||| ||||| ||||| |||||
Sbjct 376 GAGGAAAGAGGAGACGC-GATTTTTGTATCAGTTTACGAGGTGTCTCAAGAAACTGTGTA 434
Query 483 TGACCTTTTAGACCAAGAGAAGCGAGTGGTT-GCTGTACTGGAAGGTGCACAAGGGAAAA 541
|||||| ||||||||||||||| |||||||| | |||| | |||||||||||||||||||
Sbjct 435 TGACCTGTTAGACCAAGAGAAGAGAGTGGTTAG-TGTATTAGAAGGTGCACAAGGGAAAA 493
Query 542 TTCAACTAAAGGGACTTCCTCAGGTACCTGTGAAGTCACTCTCAGAATTCCA 593
||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 494 TTCAACTAAAGGGACTTTCTCAGGTACCTGTGAAGTCACTCTCAGAATTCCA 545
Score = 353 bits (191), Expect = 2e-96
Identities = 240/262 (92%), Gaps = 9/262 (3%)
Strand=Plus/Plus
Query 592 CATAAAGGTGTGATGATACATGCTACCACTGGCAACGCCAATCCAGGCTCCCTTGGGAGG 651
|||||||||||||||||||||| ||| ||||| ||||||||| ||||||||||||||||
Sbjct 607 CATAAAGGTGTGATGATACATGTTACTACTGGAAACGCCAATTCAGGCTCCCTTGGGAGA 666
Query 652 ATGAACTTTCTTGATATGGC--------A-GATTCCAGGAAACAAAACAGTGCTCTAGCT 702
|||||||||||||||||||| | |||||||||||||||||||||||| ||| |
Sbjct 667 ATGAACTTTCTTGATATGGCAGGATATGAGGATTCCAGGAAACAAAACAGTGCTTTAGGT 726
Query 703 CCTCTAGAGATTGCCAGAGTTAATAAGTTGATATATGCTTTACAGAATGTCATGTATGCT 762
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 727 CCTCTAGAGATTGCTAGAGTTAATAAGTCGATATATGCTTTACAGAATGTCATGTATGCT 786
Query 763 CTCAACGGAAATGAATCCCATGTGCCATATCGGGAGAGCAAACTCACTCGAATGCTGAAA 822
|| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 787 CTAAACGCAAATGAATCCCATGTGCCATATCGGGAGAGCAAACTCACTCGTATGCTGAAA 846
Query 823 GATTGTTTAAAAGGATGCAACA 844
|||||||||||||||| |||||
Sbjct 847 GATTGTTTAAAAGGATCCAACA 868
Score = 283 bits (153), Expect = 2e-75
Identities = 188/205 (92%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 851 CATCACGGATCTGTCTAGGTAGTAACCGAGCCATGACTAATCCTACTAAGAAGAAGATCT 910
||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||
Sbjct 935 CATCACGGATCTGTCTAGGCGGTAACCGAGCCATCACTAATCCTACCAAGAAGAAGATCA 994
Query 911 ACGGTCTTGAAAGATCTATTTCATTATGCTCTGCCGCTCAAAGGAGACAGACACCTTTGA 970
| ||||| || |||||| ||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 995 ATGGTCTCGATAGATCTGTTTCATTATCCTCAGCCGCTCAAAGGAGACAGACACCTTTGA 1054
Query 971 CTGTGTCTGCTACTTCTAGAAAACAGACAGTGCTAAGGGGAAATGTGACAGAGAGAAAAG 1030
|| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1055 CTATGTCTGCTGCTTCTAGAAAACAGACAGTGCTGAGGGGAAATGTGACAGAGAGAAA-G 1113
Query 1031 ACTAAAATCAACATTGCTGCTTCTG 1055
||||||||||||| |||| ||||||
Sbjct 1114 ACTAAAATCAACACTGCTACTTCTG 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51741171410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5