BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944025

Length=406
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G39952.1 | Symbols:  | Pentatricopeptide repeat (PPR) superf...   152    2e-36


> AT4G39952.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfamily 
protein | chr4:18527680-18530007 FORWARD LENGTH=2328
Length=2328

 Score =  152 bits (82),  Expect = 2e-36
 Identities = 99/106 (93%), Gaps = 5/106 (5%)
 Strand=Plus/Plus

Query  39   CGTCGTCTCTTGAAACCCAAAT-TTGTTGTTACTCTACGAACAATCTCATCTTCTTCTTC  97
            |||||||||||||||||| ||| ||||||||||||||||  ||| ||| |||||||||||
Sbjct  7    CGTCGTCTCTTGAAACCC-AATCTTGTTGTTACTCTACG--CAAACTC-TCTTCTTCTTC  62

Query  98   CTCAAGCTACGTCGATCGTCATATTAGTGTGATTCTCTGCGATCAG  143
            | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  63   CGCAAGCTACGTCGATCGTCATATTAGTGTGATTCTCTGCGATCAG  108



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19202280118


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5