BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944034
Length=2166
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38050.1 | Symbols: | Xanthine/uracil permease family prote... 3415 0.0
> AT4G38050.1 | Symbols: | Xanthine/uracil permease family protein
| chr4:17869379-17872482 REVERSE LENGTH=2301
Length=2301
Score = 3415 bits (1849), Expect = 0.0
Identities = 2060/2164 (95%), Gaps = 6/2164 (0%)
Strand=Plus/Plus
Query 2 TTTGAGTCTTTTTTGGAAGCAATGGATTCCGGGTCGGGTTTGGATCCGGATACTGG---T 58
||||||||||| |||||| |||||||||||||||||||||| |||||||||||||| |
Sbjct 1 TTTGAGTCTTTGTTGGAAACAATGGATTCCGGGTCGGGTTTCGATCCGGATACTGGTAAT 60
Query 59 AATAAGGGCAAAGGAAGTGGTGGTGGTAATGGTAATGGCGAGAGAAAGTTCGGTGCTTTT 118
|||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 61 AATAAGGGTAATGGAAGTGGTGGTGGTAATGGTTATGGCGAGAGAAAGTTTGGTGCTTTC 120
Query 119 TTCAAGAGAGTAGAACCCTTTTTACCTAGAAAGGATTTGAATCCAAGAGACTTAAGATCT 178
||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 121 TTCAAGAGAGTGGAACCCTTTTTACCTAAAAAGGATTTGAATCCGAGAGACTTAAGATCT 180
Query 179 TGGGCGAAGAAAACTGGTTTCGTCTCCGATTACTCCGGTGAAACCAGCACCAGTACTCGT 238
|||||||||||||||||||| || ||||||||||| |||||||||||||| ||||||||
Sbjct 181 TGGGCGAAGAAAACTGGTTTTGTATCCGATTACTCTGGTGAAACCAGCACGAGTACTCGA 240
Query 239 ACTAAGTTTGGTGAAAGCTCTGATTTTGATTTGCGTAAAGGTAGAGATCAAATAGTCACC 298
|| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 241 ACCAAGTTTGGTGAAAGCTCTGATTTTGATTTGCCAAAAGGTAGAGATCAAGTAGTCACC 300
Query 299 GGGTCATCTCACAAAACCGAGATCGACCCGATTTTGGGACGAAATAGACCCGAAATCGAA 358
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGGTCGTCTCACAAAACCGAGATCGACCCGATTTTGGGACGAAATAGACCCGAAATCGAA 360
Query 359 CACGTAACCGGATCTGAACCCGGGTCTAGAGAGGAAGAAGAGAGGAGACTAAACCGGAAT 418
|||||||| |||||||| || | ||||||||| |||||||||||||||||||||||||||
Sbjct 361 CACGTAACGGGATCTGAGCCTGTGTCTAGAGAAGAAGAAGAGAGGAGACTAAACCGGAAT 420
Query 419 GAGGCAACATCGGAGACTGAGAATGAAGGCGCGAAAATCAATAAGGATTTGGAAAATGGG 478
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 421 GAGGCAACGCCGGAGACTGAGAATGAAGGCGGGAAAATCAATAAGGATTTGGAAAATGGG 480
Query 479 TTTTATTATCCAGGAGGTGGAGGAGAATCATCAGAAGATGGACAATGGCCTAAACCAATT 538
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTTATTATCCAGGAGGTGGTGGAGAATCATCAGAAGATGGACAATGGCCTAAACCAATT 540
Query 539 GTGTTGAAGTTTGGTCTTAGAGATAATCCTGGCTTTGTTCCACTTATCTATTATGGTCTG 598
|| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 TTGATGAAGTTTGGTCTTAGAGATAATCCTGGCTTTGTTCCACTTATCTATTACGGTCTG 600
Query 599 CAACATTATCTGTCACTTGTTGGTTCACTTGTGTTTATTCCTCTGGTTATCGTACCAGCC 658
||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 601 CAACACTATCTGTCACTTGTTGGTTCACTTGTGTTTATTCCTCTGGTCATTGTACCAGCC 660
Query 659 ATGGATGGTTCCGATAAAGATACTGCCTCAGTGATTTCGACAATGCTGCTTCTTACTGGA 718
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 661 ATGGATGGTTCCGATAAAGATACAGCCTCAGTGATTTCAACAATGCTGCTTCTTACTGGA 720
Query 719 GTTACAACTATACTTCACTCTTATTTCGGTACTCGGCTTCCGTTGGTTCAAGGAAGCTCC 778
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 721 GTTACAACTATACTTCACTGTTACTTCGGTACTCGGCTTCCGTTGGTTCAAGGAAGCTCT 780
Query 779 TTTGTTTACTTGGCCCCGGTTTTGGTTATCATCAACTCTGAGGAGTTTAGGAACCTCACT 838
||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct 781 TTTGTTTACTTGGCCCCGGTTTTGGTTGTCATCAACTCTGAGGAGTTCAGAAACCTCACT 840
Query 839 GAGCATAAATTTCAGGACACAATGAGAGAACTACAGGGGGCTATAATTGTCGGTTCATTA 898
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 GAGCATAAATTTCGGGACACAATGAGAGAACTACAGGGGGCTATAATTGTTGGTTCATTA 900
Query 899 TTCCAGTGCATATTAGGATTCAGTGGTCTCATGTCTCTCCTTCTTAGATTTATTAATCCT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTCCAGTGCATATTAGGATTCAGTGGTCTCATGTCTCTCCTTCTTAGATTTATTAATCCT 960
Query 959 GTGGTAGTAGCCCCAACCGTAGCTGCAGTAGGATTAGCATTCTTTAGCTATGGATTTCCG 1018
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTGGTAGTAGCCCCAACCGTAGCTGCAGTAGGATTAGCATTCTTTAGCTATGGATTTCCA 1020
Query 1019 CAAGCCGGCACTTGTGTTGAGATCAGTGTTCCCTTAATACTTTTGCTTCTCATTTTCACA 1078
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1021 CAAGCCGGCACTTGTGTTGAGATCAGCGTTCCCTTAATACTTTTGCTTCTCATTTTCACA 1080
Query 1079 TTGTATCTCCGCGGAGTTTCAGTCTTTGGGCATCGCTTATTCCGAATTTACGCGGTGCCA 1138
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 1081 TTGTATCTCCGCGGAGTTTCACTCTTTGGGCATCGCTTATTCCGTATTTACGCGGTGCCA 1140
Query 1139 CTGAGTGCTCTGATCATATGGACATATGCATTCTTTTTAACTGTTGGTGGGGCATATGAC 1198
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1141 CTGAGTGCTCTGCTCATATGGACATATGCATTCTTTTTAACTGTTGGTGGAGCATATGAC 1200
Query 1199 TACAGAGGCTGCAATGCCGACATCCCGAGCTCTAACATATTGATAGATGAATGTAAGAAG 1258
|||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1201 TACAGAGGCTGCAACGCTGACATACCGAGCTCTAACATATTGATAGATGAATGTAAGAAG 1260
Query 1259 CATGTGTATACTATGAAGCATTGCAGAACAGATGCTTCAAATGCTTGGAGAACTGCTTCT 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CATGTGTATACTATGAAGCATTGCAGAACAGATGCTTCAAATGCTTGGAGAACTGCTTCT 1320
Query 1319 TGGATCAGAATCCCTTATCCATTTCAATGGGGGTTTCCAAATTTTCACATGAAAACTTCT 1378
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1321 TGGGTCAGAATCCCTTATCCATTTCAATGGGGGTTTCCAAATTTTCACATGAGAACTTCT 1380
Query 1379 ATCATTATGATCTTTGTGTCGTTGGTTGCATCAGTGGATTCGGTTGGAACATATCATTCT 1438
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1381 ATCATTATGATCTTTGTGTCTTTGGTTGCATCAGTGGACTCGGTTGGAACATATCATTCT 1440
Query 1439 TCATCTATGTTAGTTAATGCTAAGCGTCCGACACGGGGAATTGTCAGTAGAGGTATTGCA 1498
|||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1441 GCATCTATGATAGTGAATGCTAAGCGCCCGACACGGGGAATTGTCAGTAGAGGTATTGCA 1500
Query 1499 TTAGAAGGCTTTTGCAGTTTATTGGCTGGAATCTGGGGTTCGGGTACCGGATCAACTACT 1558
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 1501 TTAGAAGGCTTTTGCAGTTTATTAGCAGGAATCTGGGGTTCGGGTACCGGATCAACCACT 1560
Query 1559 TTAACTGAAAATATTCATACGATCAACATCACCAAGGTGGCTAGCCGAAGAGCTTTGGCG 1618
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
Sbjct 1561 TTAACTGAAAATATTCATACGATCAACATCACTAAGGTGGCTAGCAGAAGAGCTTTGGTG 1620
Query 1619 ATCGGAGCTATGTTCTTAATAGTATTGTCATTTTTAGGAAAGTTAGGCGCAATTCTTGCT 1678
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 1621 ATCGGAGCTATGTTCTTAATAGTATTGTCATTTTTAGGAAAATTAGGTGCAATTCTAGCT 1680
Query 1679 TCAATACCACAGGCTTTGGCTGCTTCAGTATTATGCTTTATATGGGCACTTACAGTAG-C 1737
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
Sbjct 1681 TCAATACCACAGGCTTTGGCTGCTTCAGTATTATGCTTTATATGGGCACTGACAGT-GTC 1739
Query 1738 TCTAGGTCTATCGAATCTACGGTATACTCAAACAGCAAGCTTTAGGAACATAACCATAGT 1797
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1740 TCTAGGTCTATCGAATCTACGGTATACGCAAACAGCAAGCTTTAGGAACATAACCATAGT 1799
Query 1798 TGGAGTCTCACTGTTTCTTGGATTATCCATCCCTGCTTACTTCCAGCAGTACCAGCCTCT 1857
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1800 TGGAGTCTCATTGTTTCTTGGATTATCCATCCCTGCTTACTTCCAGCAATACCAGCCGCT 1859
Query 1858 ATCCAGTCTAATACTACCTAGCTATTATCTCCCCTTTGGAGCTGCGTCAAGTGGACCATT 1917
|||||||||||||||||| ||||||||| | ||||||||||| || ||||| ||||||||
Sbjct 1860 ATCCAGTCTAATACTACCGAGCTATTATATTCCCTTTGGAGCCGCTTCAAGCGGACCATT 1919
Query 1918 CCAAACGGGTATCGAGCAACTTGATTTTGCGATGAATGCGGTGCTATCTCTGAATATGGT 1977
|||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 1920 CCAAACGGGTATCGAGCAACTTGATTTTGCGATGAACGCAGTGCTATCTTTGAATATGGT 1979
Query 1978 TGTAACCTTTCTACTGGCTTTCGTACTGGACAACACTGTACCGGGTAGTGAGGAAGAGAG 2037
||||||||||||||| |||||| ||||||||||||||||||| |||||| ||||||||||
Sbjct 1980 TGTAACCTTTCTACTAGCTTTCATACTGGACAACACTGTACCTGGTAGTAAGGAAGAGAG 2039
Query 2038 AGGAGTGTATGCGTGGACAAGAGCCGAGGACATGCAGATGGACCCTGAGATGCAAGCTGA 2097
|||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2040 AGGAGTATATGTGTGGACAAGAGCCGAGGACATGCAGATGGACCCTGAGATGCGAGCTGA 2099
Query 2098 TTACTCATTGCCAAGAAAAGTTGCTCGGATTTTTGGTTGCGGATGTTGCTA-GTAGATGT 2156
||||||||||||||||||| |||||| ||||||||||||| ||||||| || |||||| |
Sbjct 2100 TTACTCATTGCCAAGAAAATTTGCTCAGATTTTTGGTTGCAGATGTTGTTAAGTAGATAT 2159
Query 2157 TTAA 2160
||||
Sbjct 2160 TTAA 2163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107429166300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5