BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944037
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
AT4G38020.1 | Symbols: | tRNA/rRNA methyltransferase (SpoU) fa... 1596 0.0
> AT4G38020.1 | Symbols: | tRNA/rRNA methyltransferase (SpoU)
family protein | chr4:17861523-17863060 FORWARD LENGTH=1154
Length=1154
Score = 1596 bits (864), Expect = 0.0
Identities = 1033/1114 (93%), Gaps = 14/1114 (1%)
Strand=Plus/Plus
Query 1 GGATTAGTTGCAGAAGTGCAATGCATTGCGGATGTGCT-TTCGCTTCACAATCTGTGTCA 59
|||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||
Sbjct 26 GGATTAGTTGCAGAAGTGCAATGCATTGCGGATGTG-TATTCGCTTCACAAACTGTGTCA 84
Query 60 CCACGTCTCCCATTTGAAATCAAAGCCTCTGTTTCAAAGCTTCGATCTTCATCAGCTCAA 119
||| ||||||||||||||| ||| ||| || |||||||||||| |||| ||||| |||
Sbjct 85 TCACTTCTCCCATTTGAAATTAAAACCTATGCGTCAAAGCTTCGAGCTTCGTCAGCCCAA 144
Query 120 TTACCGAGAACCCAGATTCAGATAACCCCTTCCA-ATGATATCCT-TGTCAACAGTTCAG 177
||||||||||||||||||||||||| ||||| || ||||| | || | || || ||||||
Sbjct 145 TTACCGAGAACCCAGATTCAGATAAACCCTT-CAGATGATCT-CTCTATCTACGGTTCAG 202
Query 178 ATAAATCTCCGTCGACTAGAGTTTCGTTGCCGTCTCATGTAAATTCCATCACCAGCACTT 237
||||||||||| ||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 203 ATAAATCTCCGGCGAATAGAGTTTCGTTGCCGTCTCATGTAAATTCTATCACCAGTACTA 262
Query 238 CAAACCCTTTTGTCAAACACTGCTTGAAGCTCCGCCAAAGCTCTTCTTATCGCCACGCTC 297
|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 263 CAAACCCTTTTGTCAAACACTGCTTGAAGCTCCGCCAAAGTTCCTCGTATCGCCACGCTC 322
Query 298 ATGGCTCTGTTCTTGTCGTCGGAGCTATCCCAATCAGGGAAGTATGTATGTTTCAAATGA 357
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||
Sbjct 323 ATGGCTCTGTTCTTGTCGTCGGAACTATCCCCATCAGGGAAGTATGTATGTTTCAAACGA 382
Query 358 ATAAGCAAGGAATCACAAGTGAAATTGAGTGTCTACTTCTTCATGAGGAAGCTCAGATTC 417
||||||||||||| || | |||||||||||| ||||||||||||||||||||| ||||||
Sbjct 383 ATAAGCAAGGAATGACCACTGAAATTGAGTGCCTACTTCTTCATGAGGAAGCTAAGATTC 442
Query 418 CACAAGGATTAGAGAGTCTAAGTATCCGAATTGTTCGAGTAAGTTCTTTAGTGATGAAGA 477
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 443 CACAAGGATTAGAGAGTCTAAGTATCCGAATTGTTAGAGTAAGTTCTTTAGTGATGAAGA 502
Query 478 AACTCTCTGGAGTGCAATCTACTGAATCTGTTGAAGCCATTGCCTTGATGAGAATCCCTA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 AACTCTCTGGAGTGCAATCTACTGAATCTGTTGAAGCCATTGCCTTGATGAGAATCCCTA 562
Query 538 GCAGCTTTATTGATCTTAAAGATGATAAAGATATCATAACAGATTGCAATAAATGGTTCC 597
||||||||| ||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 563 GCAGCTTTACTGATCTTAAAGATGATAAAGACATCATAACAGACTGCAACAAATGGTTCC 622
Query 598 CTTCTTCTGCTCACCGAGTTCTTGTTCTCGATAGCATACAGGATCCGGGGAACCTTGGCA 657
||||| |||||| ||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 623 CTTCT---GCTCACAGAGTTCTTGTTCTGGACAGCATACAGGATCCAGGGAACCTTGGCA 679
Query 658 CATTAATCAGATCGGCTATGGCTTTTAATTGGGATGGTGCATTTCTGCTTCCCGGTTGTT 717
||||| ||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 680 CATTAGTCAGATCAGCTATGGCTTTTAATTGGGATGGTGCATTTCTACTTCCGGGTTGTT 739
Query 718 GTGATCCGTTCAACAACAAAGCTCTTCGAGCATGCCGAGGTGCTTCGTTTCAGCTACCTA 777
| ||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 740 GCGATCCGTACAACGACAAAGCTCTTCGAGCAAGCCGAGGTGCTTCGTTTCAGCTACCTA 799
Query 778 TAGTTTCCGGCAATTGGAACCATCTTAAGGCT-CTAGAACATGAGTTCCAGATGAAGCTA 836
|||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||||
Sbjct 800 TAGTTTCCGGGAATTGGAACCATCTTAAG-CTTCTAGAAAATGAGTTCCAGATGAAGCTA 858
Query 837 TTAGCTGGTCATCCAGCAACGACTACTCAGAAACCGAAACCTGTCTCCAAACTTTCCTTA 896
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 859 TTAGCTGGTCATCCAGCAACGACTACTCAGAAACTGAAACCTGTCTCCAAACTTTCGGTA 918
Query 897 GAGTTTGCTCAATCTGTAGCAGAGAAGCCTTTATGCTTGATTTTAGGTAGCGAAGGGAAC 956
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 919 GAGTTTGCTCAATCTTTAGCAGAGAAGCCTTTATGCTTGATTTTAGGTAGTGAAGGGAAT 978
Query 957 GGTTTGTCTGAGCAGTCACAGAAAGTATGCGAGCTTGTGAGCATTCCCATGGCAGGTGAC 1016
||||||||||||||| ||| ||||||||||| ||| ||||||||||||||||||||||||
Sbjct 979 GGTTTGTCTGAGCAGGCACGGAAAGTATGCGTGCTAGTGAGCATTCCCATGGCAGGTGAC 1038
Query 1017 TTTGAATCTCTGAACGTCTCTGTTGCTGGTGGCATTTTCTTGTTCATGCTTCAA--TCTT 1074
||||||||||| |||||||||||||||||||| |||||||||| |||||||||| ||||
Sbjct 1039 TTTGAATCTCTTAACGTCTCTGTTGCTGGTGGTATTTTCTTGTACATGCTTCAAAATCTT 1098
Query 1075 GTTCCGGTTCTTAAAACCAAAATATAAACTTGAA 1108
||| |||| | ||||||||||||||||||||||
Sbjct 1099 GTTTAGGTTGT-AAAACCAAAATATAAACTTGAA 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316989690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5