BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944040
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37990.1 | Symbols: ELI3-2, ELI3, ATCAD8, CAD-B2 | elicitor-... 1821 0.0
AT4G37980.1 | Symbols: ELI3-1, ELI3, ATCAD7, CAD7 | elicitor-ac... 1105 0.0
> AT4G37990.1 | Symbols: ELI3-2, ELI3, ATCAD8, CAD-B2 | elicitor-activated
gene 3-2 | chr4:17855876-17857639 FORWARD LENGTH=1419
Length=1419
Score = 1821 bits (986), Expect = 0.0
Identities = 1075/1119 (96%), Gaps = 2/1119 (0%)
Strand=Plus/Plus
Query 5 TCATTGTTTGATCGATTATGGGAAAGGTTCTTCAGAAAGAGGCGTTCGGGCTAGCCGCGA 64
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 72 TCATTGTTTGATCGATTATGGGAAAGGTTCTTCAGAAAGAGGCGTTCGGATTAGCCGCGA 131
Query 65 AAGACAATTCCGGAGTTCTCTCGCCTTTTC-GTTTCACTAGAAGGGAAACAGGAGAAAAG 123
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 132 AAGACAATTCCGGAGTTCTCTCGCC-TTTCAGTTTCACTAGAAGGGAAACAGGAGAAAAG 190
Query 124 GATGTGAGGTTCAAAGTGTTATTCTGTGGAATTTGTCACTCTGATTTGCATATGGTCAAG 183
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 191 GATGTGAGGTTCAAAGTGTTATTTTGTGGAATTTGTCACTCTGATTTGCATATGGTCAAG 250
Query 184 AACGAATGGGGAATGTCTACTTATCCTCTTGTCCCAGGACATGAGATCGTGGGCGTGGTG 243
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 251 AACGAGTGGGGAATGTCTACTTATCCTCTTGTCCCAGGGCATGAGATCGTGGGCGTGGTG 310
Query 244 ACTGAAATCGGAGCCAAAGTGACTAAATTCAAAACCGGAGAAAAAGTTGGAGTCGGGTGC 303
|||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 311 ACTGAAGTCGGAGCCAAAGTGACTAAATTCAAAACCGGAGAAAAAGTCGGAGTTGGGTGT 370
Query 304 TTGGTCAGCTCATGCGGGTCATGTGACAGCTGCACCGAAGGTATGGAAAACTACTGTCCG 363
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 371 TTGGTCAGCTCGTGCGGGTCATGTGACAGCTGCACCGAAGGTATGGAAAACTATTGTCCA 430
Query 364 AAATCGATCCAAACGTACGGATTCAAGTACTACGACGACACCATAACATACGGTGGTTAC 423
||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 431 AAATCAATCCAAACGTACGGATTCCCGTACTACGACAACACCATAACATACGGTGGTTAC 490
Query 424 TCCGACCACATGGTTTGCGACGAAGGTTTCATCATCCGTATTCCCGACAATCTCCCCTTG 483
|||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||
Sbjct 491 TCCGACCACATGGTTTGCGAGGAAGGTTTCGTCATCCGTATTCCAGACAATCTCCCCTTG 550
Query 484 GACGCTGCCGCGCCGCTCCTCTGTGCCGGGATCACGGTCTATTCCCCTATGAAGTATCAC 543
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 551 GACGCCGCCGCACCGCTCCTCTGTGCCGGTATCACGGTCTATTCCCCTATGAAGTATCAC 610
Query 544 GGGCTCGACAAACCCGGTATGCACATCGGTGTGGTAGGATTAGGCGGTTTAGGTCATGTA 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 GGGCTCGACAAACCCGGTATGCACATCGGTGTGGTAGGATTAGGCGGTTTAGGTCATGTA 670
Query 604 GGAGTGAAATTTGCCAAGGCTATGGGTACTAAGGTTACGGTTATTAGTACTTCGGAGAGA 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 671 GGAGTGAAATTTGCCAAGGCTATGGGTACTAAGGTTACGGTTATTAGTACTTCGGAGAAA 730
Query 664 AAGAGAGACGAGGCGATTAATCGGCTTGGTGCGGATGCTTTCTTGGTGAGCCGTGACCCG 723
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 AAGAGAGATGAGGCGATTAATCGGCTTGGTGCGGATGCTTTCTTGGTGAGCCGTGACCCA 790
Query 724 AAACAAATTAAGGATGCAATGGGGACTATGGATGGTATTATTGATACCGTATCTGCGACT 783
||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 791 AAACAGATTAAGGATGCAATGGGTACTATGGATGGTATAATTGATACCGTCTCTGCGACT 850
Query 784 CATTCGCTTCTTCCGTTGCTCGGTTTGCTGAAGCATAAGGGAAAACTTGTTATGGTTGGT 843
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 CATTCACTTCTTCCGTTGCTCGGTTTGCTGAAGCATAAGGGAAAACTTGTTATGGTTGGT 910
Query 844 GCGCCGGAGAAGCCACTCGAGCTACCGGTCATGCCTCTCATATTTGAGAGGAAGATGGTA 903
|| || |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 911 GCACCCGAGAAGCCACTCGAGCTACCTGTCATGCCTCTCATCTTTGAGAGGAAGATGGTA 970
Query 904 ATGGGAAGTATGATAGGAGGGATAAAAGAGACTCAGGAAATGATAGATATGGCCGGGAAA 963
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 971 ATGGGAAGTATGATAGGAGGGATAAAAGAGACCCAGGAAATGATAGATATGGCCGGGAAA 1030
Query 964 CACAACATCACCGCGGATATTGAGCTTATCTCTGCGGATTATGTCAACACCGCCATGGAA 1023
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1031 CACAACATCACTGCGGATATTGAGCTTATCTCTGCCGATTATGTCAACACCGCCATGGAA 1090
Query 1024 CGGCTCGAGAAGGCCGACGTTAGGTACCGCTTTGTGATTGATGTTGCCAACACATTGAAG 1083
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 CGGCTAGAGAAAGCCGACGTTAGGTACCGCTTTGTGATTGATGTTGCCAACACATTGAAG 1150
Query 1084 CCTAACCCTAATTTATAAGTCTTAAGCATTAAATTTCCT 1122
||||| |||||||||||||| |||||||||||| |||||
Sbjct 1151 CCTAATCCTAATTTATAAGTTTTAAGCATTAAACTTCCT 1189
> AT4G37980.1 | Symbols: ELI3-1, ELI3, ATCAD7, CAD7 | elicitor-activated
gene 3-1 | chr4:17852441-17854500 FORWARD LENGTH=1501
Length=1501
Score = 1105 bits (598), Expect = 0.0
Identities = 958/1130 (85%), Gaps = 32/1130 (3%)
Strand=Plus/Plus
Query 7 ATTGTTTGATCGATTATGGGAAAGGTTCTTCAGAAAGAGGCGTTCGGGCTAGCCGCGAAA 66
||| ||| ||| | |||||||||||||||| |||| |||||||| || | || ||||||
Sbjct 217 ATTATTT-ATCCA-TATGGGAAAGGTTCTTGAGAAGGAGGCGTTTGGATTGGCTGCGAAA 274
Query 67 GAC-AATTCCGGAGTTCTCTCGCCTTTTC-GTTTCACTAGAAGGGAAACAGGAGAAAAGG 124
||| || || ||| |||| ||||| |||| ||||| ||||||||| || || |||||||
Sbjct 275 GACGAA-TCGGGAATTCTTTCGCC-TTTCAGTTTCTCTAGAAGGGCGACGGGTGAAAAGG 332
Query 125 ATGTGAGGTTCAAAGTGTTATTCTGTGGAATTTGTCACTCTGATTTGCA-TATGGTCAAG 183
|||||||||||||||| || |||||||||||||| ||| ||||| || | ||||| |||
Sbjct 333 ATGTGAGGTTCAAAGTCTTGTTCTGTGGAATTTGCCACACTGATCTG-AGTATGGCCAAA 391
Query 184 AACGAATGGGGAATGTCTACTTATCCTCTTGTCCCAGGACATGAGATCGTGGGCGTGGTG 243
||||||||||| | ||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 392 AACGAATGGGGGTTAACTACTTATCCTCTTGTCCCTGGGCATGAGATTGTGGGCGTGGTG 451
Query 244 ACTGAAATCGGAGCCAAAGTGACTAAATTCAAAACCGGAGAAAAAGTTGGAGTCGGGTGC 303
|||||| | ||||||||||||| |||||||| | ||||| ||||| ||||| || |
Sbjct 452 ACTGAAGTTGGAGCCAAAGTGAAAAAATTCAACGCTGGAGACAAAGTCGGAGTTGGCT-A 510
Query 304 T-TGGTCAGCTCATGCGGGTCATGTGACAGCTGCACCGAAGG-TATGGAAAACTACTGTC 361
| ||| | |||| ||| |||||||||||||||||| || || | || ||||||||||
Sbjct 511 TATGGCCGGCTCGTGCAGGTCATGTGACAGCTGCAATGATGGCGA-CGAGAACTACTGTC 569
Query 362 CGAA-ATCGATCCAAACGTACGGATTCAAGTACTACGACGACACCATAACATACGGTGGT 420
| || || |||| ||||| |||| ||| ||| ||||| ||||| || | |||||
Sbjct 570 CAAAGAT-GATCTTAACGTCCGGAGCCAAAAACTTTGACGATACCATGACCCATGGTGGA 628
Query 421 TACTCCGACCACATGGTTTGCGAC-GAAGG-TTTCATCATCCGTATTCCCGACAATCTCC 478
||||||||||||||||| || | | | ||| |||||||||||||||||| ||||||||||
Sbjct 629 TACTCCGACCACATGGTGTGTG-CTG-AGGATTTCATCATCCGTATTCCTGACAATCTCC 686
Query 479 CCTTGGACGCTGCCGCGCCGCTCCTCTGTGCCGGGATCACGGTCTATTCCCCTATGAAGT 538
| || |||| |||||| || || ||||| |||||| |||||||||| ||||| |||||||
Sbjct 687 CATTAGACGGTGCCGCACCACTACTCTGCGCCGGGGTCACGGTCTACTCCCCCATGAAGT 746
Query 539 ATCACGGGCTCGACAAACCCGGTATGCACATCGGTGTGGTAGGATTAGGCGGTTTAGGTC 598
|||||||||||||||| ||||||||||||||||||||||| ||| |||||||||| || |
Sbjct 747 ATCACGGGCTCGACAAGCCCGGTATGCACATCGGTGTGGTGGGACTAGGCGGTTTGGGCC 806
Query 599 ATGTAGGAGTGAAATTTGCCAAGGCTATGGGTACTAAGGTTACGGTTATTAGTACTTCGG 658
|||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 807 ATGTAGCAGTGAAATTTGCTAAGGCTATGGGTACTAAAGTTACGGTTATTAGTACTTCGG 866
Query 659 AGAGAAAGAGAGACGAGG-CGATTAATCGGCTTGGTGCGGATGCTTTCTTGGTGAGCCGT 717
|| | ||||||||||||| || ||| |||||||||||||||||| |||||||||||||||
Sbjct 867 AGCGTAAGAGAGACGAGGCCG-TTACTCGGCTTGGTGCGGATGCCTTCTTGGTGAGCCGT 925
Query 718 GACCCGAAACAAATTAAGGATGCAATGGGGACTATGGATGGTATTATTGATACCGTATCT 777
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 926 GACCCGAAACAAATGAAGGATGCAATGGGGACTATGGATGGTATCATTGATACCGTATCT 985
Query 778 GCGACTCATTCGCTTCTTCCGTTGCTCGGTTTGCTGAAGCATAAGGGAAAACTTGTTATG 837
||||| ||| | ||||||||| |||| |||||||| || ||||||||||||||||||||
Sbjct 986 GCGACCCATCCACTTCTTCCGCTGCTTGGTTTGCTTAAAAATAAGGGAAAACTTGTTATG 1045
Query 838 GTTGGTGCGCC-GGAGAAGCCACTCGAGCTACCGGTCATGCCTCTCATATTTGAGAGGAA 896
|||||||| || | |||| || |||||||| || || | |||||||| |||| | ||||
Sbjct 1046 GTTGGTGCACCAGCAGAA-CCGCTCGAGCTTCCTGTTTTTCCTCTCATCTTTGGGCGGAA 1104
Query 897 GATGGTAATGGGAAGTATGATAGGAGGGATAAAAGAGACTCAGGAAATGATAGATATGGC 956
|||||| |||| |||||| ||||||| ||||| ||||| || || ||| | ||| ||||
Sbjct 1105 GATGGTGGTGGGTAGTATGGTAGGAGGTATAAAGGAGACGCAAGAGATGGTGGATTTGGC 1164
Query 957 CGGGAAACACAACATCACCGCGGATATTGAGCTTATCTCTGCGGATTATGTCAACACCGC 1016
|| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1165 TGGAAAACACAACATCACGGCGGATATTGAGCTCATCTCTGCGGATTATGTCAACACCGC 1224
Query 1017 CATGGAACGGCTCG-AGAAGGCCGACGTTAGGTACCGCTTTGTGATTGATGTTGCCAACA 1075
|||||||||||| | | ||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 1225 CATGGAACGGCTTGCA-AAGGCTGACGTTAAGTACCGATTTGTGATTGATGTTGCCAACA 1283
Query 1076 C-ATTGAAGCCTAAC-CCT-AATTTATAA-GTCTTAAGCATTAAATTTCC 1121
| || |||||| ||| ||| || | | || | |||||| ||| ||| |||
Sbjct 1284 CGAT-GAAGCC-AACTCCTTAACT-AGAAAG-CTTAAGAATTGAATATCC 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55019797320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5