BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944059

Length=362
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G37830.1 | Symbols:  | cytochrome c oxidase-related | chr4:1...   547    2e-155


> AT4G37830.1 | Symbols:  | cytochrome c oxidase-related | chr4:17787479-17788834 
REVERSE LENGTH=574
Length=574

 Score =  547 bits (296),  Expect = 2e-155
 Identities = 343/365 (94%), Gaps = 5/365 (1%)
 Strand=Plus/Plus

Query  1    agaagaagaagaa-gaagaTCCCGGAAAATGGCTACGGCGATTGTACGTTCAGCTCTTTC  59
            |||| ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  45   AGAAAAAGAACAAGGAAGATCCCGGAAAATGGCAACGGCGATTGTACGTTCAGCTCTTTC  104

Query  60   CCGAGCAGCGATC-CGCGTTGCTCCG-AGAACATCCGTCGCTCCTAAGCGAAACTTTTCT  117
            |||||||| || | ||||  |||||| || ||||||||||||||||||||||||||||| 
Sbjct  105  CCGAGCAGTGA-CTCGCGCAGCTCCGAAG-ACATCCGTCGCTCCTAAGCGAAACTTTTCC  162

Query  118  TCTTCCGCCGGCCATGACGATGCTTATGAAGCTGCGAAGTGGGAGAAGATAACTTATTTG  177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  163  TCTTCCGCCGGCCATGACGATGCTTATGAAGCTGCGAAGTGGGAGAAGATAACTTATCTG  222

Query  178  GGTATTGCTAGTTGCACTGCTTTAGCCGTCTATGTTTTATCCAAGGGCCATCATCACGGC  237
            ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct  223  GGTATTGCTAGTTGCACTGCTCTAGCTGTCTATGTTTTATCCAAGGGCCATCATCACGGC  282

Query  238  GAAGACCCTCCTGCTTATCCGTATATGCACATCCGCAACAAGGAGTTTCCTTGGGGTCCA  297
            |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| 
Sbjct  283  GAAGACCCTCCTGCCTATCCGCATATGCACATCCGCAACAAGGAGTTTCCTTGGGGTCCG  342

Query  298  GATGGTCTGTTTGAGGTGAAGCACAACGAAGGGCACTGAGTCTTGCGTGTTCACAATAAC  357
            ||||||||||||||||||||||||||| ||| ||||||||||||||||| ||| ||||||
Sbjct  343  GATGGTCTGTTTGAGGTGAAGCACAACAAAGAGCACTGAGTCTTGCGTGGTCATAATAAC  402

Query  358  GTCTT  362
            |||||
Sbjct  403  GTCTT  407



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16990499162


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5