BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944068
Length=1696
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37750.1 | Symbols: ANT, DRG, CKC, CKC1 | Integrase-type DNA... 2665 0.0
AT5G17430.1 | Symbols: BBM | Integrase-type DNA-binding superfa... 318 9e-86
> AT4G37750.1 | Symbols: ANT, DRG, CKC, CKC1 | Integrase-type DNA-binding
superfamily protein | chr4:17739514-17742401 FORWARD
LENGTH=2148
Length=2148
Score = 2665 bits (1443), Expect = 0.0
Identities = 1620/1703 (95%), Gaps = 22/1703 (1%)
Strand=Plus/Plus
Query 12 aaaaa-aaa-CATGAAGTCTTTTTGTGATAATGATGATAATAATCATAGCAATACGACTA 69
||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 258 AAAAAGAAACCATGAAGTCTTTTTGTGATAATGATGATAATAATCATAGCAACACGACTA 317
Query 70 ATTTGCTAGGTTTCTCATTGTCTTCAAATATGATGAAAATGGGAGGAAGAGGAGGTGGAG 129
||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 318 ATTTGTTAGGGTTCTCATTGTCTTCAAATATGATGAAAATGGGAGGTAGAGGAGGTAGAG 377
Query 130 AAGCTATTTACTCATCTACAACTTCTTCAGCTGCAACTTCTTCTTCTTCTGTTCCACCAC 189
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 378 AAGCTATTTACTCATCTTCAACTTCTTCAGCTGCAACTTCTTCTTCTTCTGTTCCACCTC 437
Query 190 AACTTGTTGTTGGTGACAACACTAGCAACTTTGGTGTTTGCTATGGATCTAACTCAGCTG 249
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 438 AACTTGTTGTTGGTGACAACACTAGCAACTTTGGTGTTTGCTATGGATCTAACCCAAATG 497
Query 250 GAGAAATCTATTCTCACATGTCTGTGATGCCACTCAGATCTGACGGTTCTCTTTGCTTAA 309
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 498 GAGGAATCTATTCTCACATGTCTGTGATGCCACTCAGATCTGATGGTTCTCTTTGCTTAA 557
Query 310 TGGAAGCTCTCAACAGATCTTCTCACTCAAATCATCATCAAGATTCATCTCCAAAGATGG 369
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||
Sbjct 558 TGGAAGCTCTCAACAGATCTTCTCACTCGAATCACCATCAAGATTCATCTCCAAAGGTGG 617
Query 370 AGGATTTCTTTGGGACCCATCACAACAACACAAGTCCCAAAGAAGCCATGGATCTTAGCT 429
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 618 AGGATTTCTTTGGGACCCATCACAACAACACAAGTCACAAAGAAGCCATGGATCTTAGCT 677
Query 430 TAGATAGTTTATTCTACAACACCACTCATGAGCCCAACACAAATACAAACTTTCAAGAGT 489
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 678 TAGATAGTTTATTCTACAACACCACTCATGAGCCCAACACGACTACAAACTTTCAAGAGT 737
Query 490 TCTTTAGCTTCCCTCAAACCAGAAACCACCATCAAGAAGAAACAAGAAATTACGAGAATG 549
|||||||||||||||||||||| || ||||| | |||||||| |||||||||| |||||
Sbjct 738 TCTTTAGCTTCCCTCAAACCAG-AA--ACCATGAGGAAGAAACTAGAAATTACGGGAATG 794
Query 550 ACCCTGGTTTGACAAATGGAGGGTCTTTTAATGTAGGGGTATATGGGGAATTTCAACAGT 609
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 ACCCTAGTTTGACACATGGAGGGTCTTTTAATGTAGGGGTATATGGGGAATTTCAACAGT 854
Query 610 CACTGAGCTTATCCATGAGCCCTGGGTCACAATCTAGCTGCATCACTGGCTCTcaccacc 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 CACTGAGCTTATCCATGAGCCCTGGGTCACAATCTAGCTGCATCACTGGCTCTCACCACC 914
Query 670 a-c--c--aa-caaaaccaaaacca--aaa-cc---acca-c--caGATCTCTGAAGCTC 714
| | | || |||||||||||||| ||| || |||| | ||||||||||||||||
Sbjct 915 ACCAACAAAACCAAAACCAAAACCACCAAAGCCAAAACCACCAGCAGATCTCTGAAGCTC 974
Query 715 TTGTGGAGACTAGTGTTGGGTTTGAGACGACGACAATGGCGGCTGCGAAGAAGAAGAGGG 774
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 TTGTGGAGACAAGCGTTGGGTTTGAGACGACGACAATGGCGGCTGCGAAGAAGAAGAGGG 1034
Query 775 GACAAGAGGAAGTTGTAGTTGTTGGGCAGAAACAGATTGTTCATAGAAAATCTATCGATA 834
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1035 GACAAGAGGATGTTGTAGTTGTTGGTCAGAAACAGATTGTTCATAGAAAATCTATCGATA 1094
Query 835 CTTTTGGGCAACGAACTTCTCAATACCGAGGCGTTACAAGACATAGATGGACTGGTAGAT 894
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 CTTTTGGACAACGAACTTCTCAATACCGAGGCGTTACAAGACATAGATGGACTGGTAGAT 1154
Query 895 ATGAAGCTCATCTATGGGACAATAGTTTCAAGAAGGAAGGTCACAGCAGAAAAGGAAGAC 954
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1155 ATGAAGCTCATCTATGGGACAATAGTTTCAAGAAGGAAGGTCACAGTAGAAAAGGAAGAC 1214
Query 955 AAGTTTATCTGGGAGGTTATGATATGGAGGAGAAAGCTGCTCGAGCATATGATCTTGCTG 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 AAGTTTATCTGGGAGGTTATGATATGGAGGAGAAAGCTGCTCGAGCATATGATCTTGCTG 1274
Query 1015 CACTCAAGTACTGGGGTCCCTCTACTCACACCAATTTCTCTGCAGAGAATTATCAGAAAG 1074
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1275 CACTCAAGTACTGGGGTCCCTCTACTCACACCAATTTCTCTGCGGAGAATTATCAGAAAG 1334
Query 1075 AGATTGAAGACATGAAGAATATGACTAGACAAGAATATGTTGCTCATTTGAGAAGGAAGA 1134
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1335 AGATTGAAGACATGAAGAACATGACTAGACAAGAATATGTTGCACATTTGAGAAGGAAGA 1394
Query 1135 GCAGTGGTTTCTCTAGGGGTGCTTCCATCTATAGAGGAGTCACAAGACATCACCAGCATG 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 GCAGTGGTTTCTCTAGGGGTGCTTCCATCTATAGAGGAGTCACAAGACATCACCAGCATG 1454
Query 1195 GAAGGTGGCAAGCACGGATTGGTAGAGTTGCCGGAAACAAAGATCTCTACCTCGGAACTT 1254
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 1455 GAAGGTGGCAAGCACGGATTGGTAGAGTCGCTGGAAACAAAGATCTCTACCTTGGAACTT 1514
Query 1255 TTGGAACTCAAGAAGAAGCTGCAGAAGCCTACGATGTAGCAGCAATCAAGTTCCGTGGCA 1314
||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1515 TTGGAACCCAAGAAGAAGCTGCAGAAGCTTACGATGTAGCAGCAATTAAGTTCCGTGGCA 1574
Query 1315 CAAACGCTGTGACTAACTTTGATATCACGAGGCACGATGTTGATCGTATCATGTCTAGTA 1374
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1575 CAAATGCTGTGACTAACTTTGATATCACGAGGTACGATGTTGATCGTATCATGTCTAGTA 1634
Query 1375 ACACACTCTTGTCTGGAGAGTTAGCAAGAAGGAACAACAACAGCATCGTAGTCAGGAATA 1434
||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||
Sbjct 1635 ACACACTCTTGTCTGGAGAGTTAGCGCGAAGGAACAACAACAGCATTGTCGTCAGGAATA 1694
Query 1435 ATGAAGACCAAACCGCTCTTAACGCTGTCGTGGACGGTGGTTCCAACAAAGAAGTCAGTA 1494
|||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||||
Sbjct 1695 CTGAAGACCAAACCGCTCTAAATGCTGTTGTGGAAGGTGGTTCCAACAAAGAAGTCAGTA 1754
Query 1495 CTCCGGAGAGACTTTTGAGTTTTCCGGCGATTTTCGCGTTGCCTCAAGTTAATCAGAAGA 1554
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1755 CTCCCGAGAGACTCTTGAGTTTTCCGGCGATTTTCGCGTTGCCTCAAGTTAATCAAAAGA 1814
Query 1555 TGTTCGGATCAAATGTGGTCGGAAATATGAGTTCCT-GGACTTCAAACCCTAATGCTGAG 1613
|||||||||||||| ||| ||||||||||||| ||| |||| ||||||||||||||||||
Sbjct 1815 TGTTCGGATCAAATATGGGCGGAAATATGAGT-CCTTGGACATCAAACCCTAATGCTGAG 1873
Query 1614 CTTAAGACCGTTGCTCTTACTATGCCTCAGATGCCGGTTTTCGCTGCTTGGGCTGATTCT 1673
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1874 CTTAAGACCGTCGCTCTTACTTTGCCTCAGATGCCGGTTTTCGCTGCTTGGGCTGATTCT 1933
Query 1674 TGATCGACATCAATCACTAACTC 1696
||||| || ||||| ||||||||
Sbjct 1934 TGATCAACTTCAATGACTAACTC 1956
> AT5G17430.1 | Symbols: BBM | Integrase-type DNA-binding superfamily
protein | chr5:5742542-5745568 REVERSE LENGTH=1755
Length=1755
Score = 318 bits (172), Expect = 9e-86
Identities = 412/526 (78%), Gaps = 23/526 (4%)
Strand=Plus/Plus
Query 819 AGAAAATCTATCGATACTTTTGGGCAACGAACTTCTCA-ATACCGAGGCGTTACAAGACA 877
|||||| |||| || | |||||| ||| | || ||| | |||||| || |||||||| ||
Sbjct 593 AGAAAA-CTATTGAGAGTTTTGGACAAAGGACGTCT-ATATACCGCGGTGTTACAAGGCA 650
Query 878 TAGATGGACTGGTAGATATGAAGCTCATCTATGGGACAATAGTTTCAAGAAG-GAAGGTC 936
| | ||||| |||||||| || || ||| ||||||||||||||| ||| ||| ||||| |
Sbjct 651 TCGGTGGACAGGTAGATACGAGGCACATTTATGGGACAATAGTTGCAA-AAGAGAAGG-C 708
Query 937 ACAG-C-AGAAAAGGAAGACAAGTTTATCTGGGAGGTTATGATATGGAGGAGAAAGCTGC 994
||| | | |||||||||||||||||||||||||||||||| | || || ||||| ||
Sbjct 709 -CAGACTCGCAAAGGAAGACAAGTTTATCTGGGAGGTTATGACAAAGAAGAAAAAGCAGC 767
Query 995 TCGAGCATATGATCTT-GCTGCACTCAAGTACTGGGGTCCCTCTACTCAC-ACCAATTTC 1052
| | || || ||| || || ||||| ||||| ||||| || | ||| || || || |||
Sbjct 768 TAGGGCTTACGAT-TTAGCCGCACTAAAGTATTGGGGAACCACCACT-ACTACTAACTTC 825
Query 1053 TC-T-GCAGAGAATTATCAGAAAGAGATTGAAGACATGAAGAATATGACTAGACAAGAAT 1110
| | | || |||| || |||||||| | ||||| |||||| | ||||| || ||||| |
Sbjct 826 CCCTTG-AGTGAAT-ATGAGAAAGAGGTAGAAGAGATGAAGCACATGACGAGGCAAGAGT 883
Query 1111 ATGTTGC-TCATTTGAGAAGGAAGAGCAGTGGTTTCTCTAGGGGTGCTTCCATCTATAGA 1169
||||||| || | || | ||||| || |||||||||||| | ||||| || || ||| ||
Sbjct 884 ATGTTGCCTC-TCTGCGCAGGAAAAGTAGTGGTTTCTCTCGTGGTGCATCGATTTATCGA 942
Query 1170 GGAGTCACAAGACATCACCAGCATGGAAGGTGGCAAGC-ACGGATTGGTAGAGTTGCCGG 1228
||||| ||||| |||||||| ||||||||||||||||| | |||| || ||||| |||||
Sbjct 943 GGAGTAACAAGGCATCACCAACATGGAAGGTGGCAAGCTA-GGATCGGAAGAGTCGCCGG 1001
Query 1229 AAACAAAGATCTCTACCTCGGAACTTTTGGAACTCAAGAAGAAGCTGCAGAAGCCTACGA 1288
|||||||| |||||| | |||||||| || || || ||||| ||||| || || || ||
Sbjct 1002 TAACAAAGACCTCTACTTGGGAACTTTCGGCACACAGGAAGAGGCTGCTGAGGCTTATGA 1061
Query 1289 TGTAGCAGCAATCAAGTTCCGTGGCACAAA-CGCTGTGACTAACTT 1333
| ||||| || || ||| | || | || ||| |||||||||||
Sbjct 1062 CATTGCAGCCATTAAATTCAGAGG-ATTAAGCGCAGTGACTAACTT 1106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83834910150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5