BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944074

Length=589
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G37700.1 | Symbols:  | unknown protein; Has 64 Blast hits to...   592    2e-168


> AT4G37700.1 | Symbols:  | unknown protein; Has 64 Blast hits 
to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr4:17710272-17710873 REVERSE 
LENGTH=602
Length=602

 Score =  592 bits (320),  Expect = 2e-168
 Identities = 433/488 (89%), Gaps = 5/488 (1%)
 Strand=Plus/Plus

Query  104  ACACAAGATAAGATGAGCAAGAAAAAGGAGACGAAGCTAAGCAAGTACATAAAAGTTCCC  163
            ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| 
Sbjct  30   ACA-AAGATAAGATGAGCAAGAAAAAGGAGACGAAGCTAAGCAAATACATAAAAGTTCCG  88

Query  164  ATAAAGATGCTGGTCAAAGCTAGAGACTTGTACATACAAAGCATGAATCAATGGTCTTCC  223
            |||||||||||||| |||||||||||| ||||||||| ||||||||||||||  ||||||
Sbjct  89   ATAAAGATGCTGGTGAAAGCTAGAGACATGTACATACGAAGCATGAATCAATTTTCTTCC  148

Query  224  CATGACCTTATTGGCAGCGGCATGGGTTTAGGGGTACCGGTCTGCAACGTAAGCACTCTT  283
            |||||||||  ||| ||||||||| |||| ||| |||| |||||||||||||||||||||
Sbjct  149  CATGACCTTCCTGGAAGCGGCATGAGTTTTGGGATACCCGTCTGCAACGTAAGCACTCTT  208

Query  284  CCGCGAAGTTTTAGCGCTAGCCACGCCCAATATTCCATGAGACCTGAAGATGATCGTGTG  343
            ||||||||||| || ||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct  209  CCGCGAAGTTTCAGTGCTAGCCACTCCCAATATTCCGTGAGAGCTGAAGATGATCGTGTG  268

Query  344  CCTGAGCTTGTGAGAGCCGCATCAGCTAGAAATATGATCATTGGTGATGCGCGACATGGA  403
             || | ||||| |||||||||||||||||||||  || ||||| || ||| ||||||| |
Sbjct  269  GCTAAACTTGTAAGAGCCGCATCAGCTAGAAATGCGACCATTGATGGTGCACGACATGAA  328

Query  404  CCATCGAAATTGCGGAAAGCTAAGAGTTCGAGAAGCTGTGGTGGTCTTCATGGGTTTGAG  463
            ||||| ||||||||||| ||||||||||||||||| |||||||||| || ||| ||||||
Sbjct  329  CCATCAAAATTGCGGAAGGCTAAGAGTTCGAGAAGTTGTGGTGGTCATCGTGGCTTTGAG  388

Query  464  AAAATTGATGAGACAAGTCCTTTGATTAGTTTTGGGAGTAAGCACAAGATGCTTCAAAAG  523
            ||||| |||||| |||||||||||||||| ||||||||||||||||||||| |||||| |
Sbjct  389  AAAATAGATGAGGCAAGTCCTTTGATTAGCTTTGGGAGTAAGCACAAGATGTTTCAAAGG  448

Query  524  AGTAAGAGTTACGGTGTTGCCAAATATACTTATTCGCTCCAATAA--TTGTTTTGTTTAT  581
            |||||||||||| |||||| ||||||  ||||  | ||  || ||  |||||||||||||
Sbjct  449  AGTAAGAGTTACAGTGTTGTCAAATA--CTTAGGCTCTTAAAAAAAATTGTTTTGTTTAT  506

Query  582  GTGCTACG  589
            ||| ||||
Sbjct  507  GTGTTACG  514



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28332058908


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5