BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944075
Length=1352
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37690.1 | Symbols: | Galactosyl transferase GMA12/MNN10 fa... 2065 0.0
AT4G38310.1 | Symbols: | Galactosyl transferase GMA12/MNN10 fa... 540 1e-152
AT4G38320.1 | Symbols: HHP5 | heptahelical protein 5 | chr4:179... 217 3e-55
> AT4G37690.1 | Symbols: | Galactosyl transferase GMA12/MNN10
family protein | chr4:17707894-17709847 FORWARD LENGTH=1954
Length=1954
Score = 2065 bits (1118), Expect = 0.0
Identities = 1278/1354 (94%), Gaps = 16/1354 (1%)
Strand=Plus/Plus
Query 1 TCTCAATCCCATCATCTCCGATGGGAAAGTACGGCGGCGCAAAGACCAAAACCACTGTAT 60
||||| || ||||||||||||||||||| ||||||||||||||||| |||| | ||||
Sbjct 390 TCTCAGTCTCATCATCTCCGATGGGAAAACCCGGCGGCGCAAAGACCAGAACCGCCGTAT 449
Query 61 GTTTATCAGATGGTGCTATCTTTCTTGCCGGAGCTTTCATGTCTCTTACTCTCGTCTGGT 120
|||||||||| |||| | ||||||| |||||||||||||||||||| |||||||||||||
Sbjct 450 GTTTATCAGACGGTGTTTTCTTTCTCGCCGGAGCTTTCATGTCTCTCACTCTCGTCTGGT 509
Query 121 CTTACTTCTCAATCTTTTCACCTTCTTTCACTTTCACCTTCACCGGTTTACGTCACGGCG 180
|||||||||||||||||||| | | || |||||| | || |||||||||||| ||
Sbjct 510 CTTACTTCTCAATCTTTTCA-C--C-TT--CTTTCA-C--CA---GTTTACGTCACGACG 557
Query 181 GCGAACCGGTTCAATGCTCCGGTTTAAACATGCAATTGGACCCA-CGTGAACCCGGTTTT 239
|| ||||||||||||||||||||||| |||||||||| |||||| | || |||||||||
Sbjct 558 GCAAACCGGTTCAATGCTCCGGTTTAGACATGCAATTCGACCCATC-CGAGCCCGGTTTT 616
Query 240 TACGACGATCCGGAGCTAAGCTACTCGATCGAGAAATCAATCACAAACTGGGACGAGAAA 299
|||||||| ||||| ||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 617 TACGACGACCCGGATCTAAGCTACTCGATCGAGAAACCAATCACAAAATGGGACGAGAAA 676
Query 300 CGGCACCAATGGTTTAAATCACACCCATCATTCAAACCCGGTTCAGAAAACCGGATCTTA 359
|| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 677 CGAAACCAATGGTTTGAATCACACCCATCTTTCAAACCCGGTTCAGAAAACCGGATCGTA 736
Query 360 ATGGTAACCGGTTCACAATCCTCGCCGTGTAAAAACCCAATCGGAGACCATTTGTTACTC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 737 ATGGTAACCGGTTCACAATCCTCGCCGTGTAAAAACCCAATCGGAGACCATTTATTACTC 796
Query 420 CGGTGCTTCAAAAACAAAGTCGATTACGCTCGAATCCATGGCCATGAAATCTTCTACAGC 479
|| |||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 797 CGATGCTTCAAAAACAAAGTCGATTACGCTCGAATCCATGGTCACGACATCTTCTACAGC 856
Query 480 AATGCTCTTCTTCATCCGAAGATGAATTCGTATTGGGCGAAACTTCCGGTGGTTAAAGCG 539
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 857 AATTCTCTTCTTCATCCGAAGATGAATTCTTATTGGGCGAAACTTCCGGTGGTTAAAGCG 916
Query 540 GCGATGCTTGCTCACCCAGAGGCGGAGTGGATTTGGTGGGTTGATTCCGACGCTATCTTC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 GCGATGCTTGCTCACCCAGAGGCGGAGTGGATTTGGTGGGTTGATTCCGACGCTATCTTC 976
Query 600 ACCGACATGGAATTTAAACCGCCGCTTCACCGTTACCGTCAACATAACCTCGTCGTTCAC 659
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 977 ACCGACATGGAATTTAAACCGCCGCTTCACCGTTACCGTCAACACAACCTCGTCGTTCAC 1036
Query 660 GGTTGGCCAAATATAATCTACGATAAACCGAGTTGGACGGCGTTAAACGCCGGCGttttt 719
||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct 1037 GGTTGGCCAAATATAATCTACGAGAAACAGAGCTGGACGGCGTTAAACGCCGGCGTTTTC 1096
Query 720 ttAATCAGGAATTGTCAATGGTCAATGGACTTAATTGACACGTGGAAGAGTATGGGACCA 779
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 TTAATAAGAAATTGTCAATGGTCAATGGACTTAATTGACACGTGGAAGAGTATGGGACCA 1156
Query 780 GTGAGTCCAGAGTACAAAAAGTGGGGTCCGATCCAACGGTCGATATTCAAAGATAAGTTG 839
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1157 GTGAGTCCAGATTACAAAAAATGGGGTCCCATCCAACGGTCGATATTCAAAGATAAGTTG 1216
Query 840 TTTCCAGAGTCAGATGATCAGACGGCTCTGATTTATTTGCTTTATAAACATAAAGAGTTG 899
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1217 TTTCCAGAGTCAGATGATCAAACGGCTCTGATTTATTTGCTTTATAAACATAAAGAGTTG 1276
Query 900 TATTATCCTAAGATATACCTCGAAGGAGAGTATTATCTCCAAGGGTATTGGATTGGTGTA 959
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1277 TATTATCCTAAGATATACCTCGAAGCAGAGTATTATCTCCAAGGGTATTGGATTGGTGTA 1336
Query 960 GTTGATGG-TTTCGCTAACGTGACGGAGCGGTATCTTGAGATGGAACGAGAAGACGACAC 1018
||| || |||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1337 TTTGG-GGATTTCGCCAACGTGACGGAACGGTATCTTGAGATGGAACGAGAAGACGACAC 1395
Query 1019 GTTGCGTAGACGTCACGCGGAGAAAGTGAGCGAGCGATACGGTGCGTTTAGAGAAGAGCG 1078
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1396 GTTGCGTAGGCGTCACGCGGAGAAAGTGAGCGAACGATACGGTGCGTTTAGAGAAGAGCG 1455
Query 1079 GTTTTTGAAAGGCGAGTTTGGTGGGAGAGGTAGTCGCAGACGCGCGTTTATAACGCATTT 1138
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1456 GTTTTTGAAAGGCGAGTTTGGTGGGAGAGGAAGTCGCAGACGCGCGTTTATAACGCATTT 1515
Query 1139 TACGGGATGTCAACCATGTAGCGGTGATCACAATCCGAGTTACGATGGTGACACGTGTTG 1198
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1516 TACGGGATGTCAACCATGTAGCGGTGATCATAATCCGAGTTACGATGGTGACACGTGTTG 1575
Query 1199 GAATGAGATGATCAGAGCCCTTAATTTTGCTGATAATCAGGTGATGCGCGTGTATGGTCA 1258
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1576 GAATGAGATGATCAGAGCCCTTAATTTTGCTGATAATCAGGTGATGCGCGTGTATGGTTA 1635
Query 1259 CGTGCATTCTGATTTGAGTAAGACTTCTCCGCTTCAACCTCTGCCGTTCGATTATCCTAA 1318
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 CGTTCATTCTGATTTGAGTAAGACTTCTCCGCTTCAACCTCTGCCGTTCGATTATCCTAA 1695
Query 1319 TGAGGCTCGGTGATTATTTTCTTAATAAGTACTT 1352
||| ||| |||||||| |||||||||||||||||
Sbjct 1696 TGAAGCTTGGTGATTAATTTCTTAATAAGTACTT 1729
> AT4G38310.1 | Symbols: | Galactosyl transferase GMA12/MNN10
family protein | chr4:17948482-17948844 FORWARD LENGTH=363
Length=363
Score = 540 bits (292), Expect = 1e-152
Identities = 332/351 (95%), Gaps = 3/351 (1%)
Strand=Plus/Plus
Query 210 ATGCAATTGGACCCACGTGAACCCGGTTTTTACGACGATCCGGAGCTAAGCTACTCGATC 269
|||||||| ||||| | || ||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGCAATTAGACCCTCCCGAGCCCGGTTTTTACGACGATCCGGATCTAAGCTACTCGATC 60
Query 270 GAGAAATCAATCACAAACTGGGACGAGAAACGGCACCAATGGTTTAAATCACACCCATCA 329
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 61 GAGAAATCAATCACAAACTGGGACGAGAAACGGCACGAATGGTTTAAATCACACCCTTCA 120
Query 330 TTCAAACCCGGTTCAGAAAACCGGATCTTAATGGTAACCGGTTCACAATCCTCGCCGTGT 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCAAACCCGGTTCAGAAAACCGGATCTTAATGGTAACCGGTTCACAATCCTCGCCGTGT 180
Query 390 AAAAACCCAATCGGAGACCATTTGTTACTCCG--G-TGCTTCAAAAACAAAGTCGATTAC 446
||||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 181 AAAAACCCAATCGGAGACCATTTGTTACTCCTCCGATGTTTCAAAAACAAAGTCGATTAC 240
Query 447 GCTCGAATCCATGGCCATGAAATCTTCTACAGCAATGCTCTTCTTCATCCGAAGATGAAT 506
||| |||||||||| || || ||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GCTAGAATCCATGGTCACGACATCTTCTACAGCAATTCTCTTCTTCATCCGAAGATGAAT 300
Query 507 TCGTATTGGGCGAAACTTCCGGTGGTTAAAGCGGCGATGCTTGCTCACCCA 557
|||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 TCGTATTGGGCGAAACTTCCGGTGGTTAAAGCTGCGATGCTTGCTCACCCA 351
> AT4G38320.1 | Symbols: HHP5 | heptahelical protein 5 | chr4:17948692-17950522
FORWARD LENGTH=1432
Length=1432
Score = 217 bits (117), Expect = 3e-55
Identities = 133/141 (94%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 417 CTCCGGTGCTTCAAAAACAAAGTCGATTACGCTCGAATCCATGGCCATGAAATCTTCTAC 476
||||| || |||||||||||||||||||||||| |||||||||| || || |||||||||
Sbjct 1 CTCCGATGTTTCAAAAACAAAGTCGATTACGCTAGAATCCATGGTCACGACATCTTCTAC 60
Query 477 AGCAATGCTCTTCTTCATCCGAAGATGAATTCGTATTGGGCGAAACTTCCGGTGGTTAAA 536
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGCAATTCTCTTCTTCATCCGAAGATGAATTCGTATTGGGCGAAACTTCCGGTGGTTAAA 120
Query 537 GCGGCGATGCTTGCTCACCCA 557
|| ||||||||||||||||||
Sbjct 121 GCTGCGATGCTTGCTCACCCA 141
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66565922670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5