BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944077
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
AT1G50240.2 | Symbols: FU | Protein kinase family protein with ... 669 0.0
AT4G40000.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 364 5e-100
> AT1G50240.2 | Symbols: FU | Protein kinase family protein with
ARM repeat domain | chr1:18607047-18614162 FORWARD LENGTH=4053
Length=4053
Score = 669 bits (362), Expect = 0.0
Identities = 419/446 (94%), Gaps = 6/446 (1%)
Strand=Plus/Plus
Query 290 TCTCCT-GTGTTACATCAGATACGAGTTATATGTAGGTCAACCTCCCTTCTACACCAATT 348
|||| | |||||| || | |||||||||||||||||||| |||||||||||||||||||
Sbjct 575 TCTCTTGGTGTTATAT-TG-TACGAGTTATATGTAGGTCAGCCTCCCTTCTACACCAATT 632
Query 349 CTGTGTATGCTCTCATTCGTCACATTGTTAAGGATCCTGTCAAATATCCTGATGAAATGA 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 CTGTGTATGCTCTCATTCGTCACATTGTTAAGGATCCTGTCAAATATCCTGATGAAATGA 692
Query 409 GTCCTTATTTCAAAAGCTTTTTGAAAGGATTGCTCAACAAGGAACCT-AGAAATCGATTA 467
|| |||||||| |||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 693 GTACTTATTTCGAAAGCTTTTTGAAAGGATTGCTCAACAAGGAACCCCACAG-TCGATTA 751
Query 468 ACCTGGCCTGCTCTTCGTGAGCACCCCTTCGTTAAAGAATCACAAGAAGAAGTTGAAGCC 527
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 752 ACCTGGCCTGCTCTTCGTGAGCACCCTTTCGTTAAAGAAACACAAGAAGAAGTTGAAGCC 811
Query 528 AGGGAAATCCAAACTGCAGTAGTTGACCATAAGGCAGCTTGGATGCTCAAAGGAAATGGA 587
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 812 AGGGAAATCCATACTGCAGTAGTTGACAATAAGGCAGCTTGGATGCTCAAAGGAAATGGA 871
Query 588 GGGCAACAGAGAAATGAAAAGTGCGACTCTGTGACCCTGGCTGAGAACATGTCTGCAACA 647
||||||||||||||||||||||||||||| |||||||||| |||| |||||||||| |||
Sbjct 872 GGGCAACAGAGAAATGAAAAGTGCGACTCAGTGACCCTGGTTGAGGACATGTCTGCTACA 931
Query 648 AAAGGTCTAGCTGACGTTCAGTCAGATATGAAGAGTGCTGTCAATGTAAATTCTCCACCC 707
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 932 AAAGGTCTAGCTGACGTTCAGTCAGATATGAAGAGTGCTGTCAAAGTAAATTCTCCACCC 991
Query 708 CCCTGAGGATTTTCTTGGATTCCCAA 733
| |||||||||| | ||||||||||
Sbjct 992 AC-TGAGGATTTTGTGGGATTCCCAA 1016
> AT4G40000.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr4:18543893-18547523
REVERSE LENGTH=2528
Length=2528
Score = 364 bits (197), Expect = 5e-100
Identities = 215/224 (96%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 1 TGAAATTGGAGAATGATTTCATGAAATATCTTCAGGCTGAGGCTATAGAGAGTGGTGAAC 60
|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 361 TGAAATTGGAGAATGATTTCATGATATCTCTTCAGGCTGAGGCTATAGAGAGTGGTGAAT 420
Query 61 TGGAGGCTACCAAGCCTTTGCCTTGGTACCCTAAGAATCTTGCTTGGCATTCTAATTTTT 120
||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 421 TGGAGGCTATCAAGCCTCTGCCTTGGTATCCTAAGAATCTTGCTTGGCATTCTAATTTTT 480
Query 121 CACGCAAGGAGATTAGCAAAAACCAGATACTTGAGAGGTTTCATGAGTTTCTTAAGTTAG 180
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 481 CACGCAAGGAGATTAGGAAAAACCAGACACTTGAGAGGTTTCATGAGTTTCTTAAGTTAG 540
Query 181 AAACTGAAGTTGGGAACATGACCAGGCAAGAATCAGTTAGCATG 224
||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 541 AAACTGAAGCTGGGAACATGACCAGGCAAGAATCAGTTAGCATG 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35565776076
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5