BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944078
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37900.1 | Symbols: | Protein of unknown function (duplicat... 497 7e-140
AT4G38240.1 | Symbols: CGL1, CGL, GNTI | alpha-1,3-mannosyl-gly... 387 2e-106
AT4G40000.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 237 2e-61
AT4G38290.1 | Symbols: | Haemolysin-III related integral membr... 176 4e-43
AT4G37680.1 | Symbols: HHP4 | heptahelical protein 4 | chr4:177... 176 4e-43
AT2G40710.1 | Symbols: | Haemolysin-III related integral membr... 176 4e-43
AT4G37682.1 | Symbols: | Protein of unknown function (DUF1399)... 154 2e-36
AT4G38320.1 | Symbols: HHP5 | heptahelical protein 5 | chr4:179... 128 1e-28
> AT4G37900.1 | Symbols: | Protein of unknown function (duplicated
DUF1399) | chr4:17821737-17824627 REVERSE LENGTH=2428
Length=2428
Score = 497 bits (269), Expect = 7e-140
Identities = 296/309 (96%), Gaps = 2/309 (1%)
Strand=Plus/Plus
Query 336 GCAATCTCAGAGCCAGCAAATATCTCAGCTCTTGAGAAATGTACCACTTACGATCTTGTT 395
|||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||
Sbjct 503 GCAATCTCAGAGCCAGCAGATGTCTCAGCTCTTGAGAAATGTACCACTTATGATCTTGTT 562
Query 396 TCAACTGTCAAGAGACAAAGCCCATTTTACTACCAGGTTTCAAGAGCTCATGTAGATAAT 455
| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 563 TTAGCTGTCAAGAGACAAAGCCCATTTTTCTACCAGGTTTCAAGAGCTCATGTAGATAAT 622
Query 456 GATGTCTTTCTGCAAGAAGCTGTGGCTAGATACAAAGCATTTCTCTACTTGATCAAAGGT 515
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 623 GACGTCTTTCTGCAAGAAGCTGTGGCTAGATACAAAGCATTTCTCTACTTGATCAAGGGT 682
Query 516 AACCGAGAAAGGTCGATTAAACTTTTCTGTGTTCCGACTTACGATATTGATCTTATCTGG 575
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 683 AACCGAGAAAGATCGATCAAACTTTTCTGTGTTCCGACTTACGATATTGATCTTATCTGG 742
Query 576 CACACACATCAGCTTCATGCTCA-CTCTTACTGCAATGATTTGACTAAGATGATTGGTAA 634
||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||
Sbjct 743 CACACACATCAGCTTCATGCT-ATCTCTTATTGCAATGATTTGACTAAGATGATTGGTAA 801
Query 635 GGTCTTGGA 643
|||||||||
Sbjct 802 GGTCTTGGA 810
Score = 152 bits (82), Expect = 7e-36
Identities = 99/107 (93%), Gaps = 2/107 (2%)
Strand=Plus/Plus
Query 180 GCGTTGACCTCTTT-GCTGCAGCCAAGAAACACCTCCAGTTCCACGGAGCTGTTGATCGC 238
|||||||||| ||| |||||||||||||||||||| | |||| |||||||||||||||
Sbjct 123 GCGTTGACCT-TTTGGCTGCAGCCAAGAAACACCTTCTCTTCCTCGGAGCTGTTGATCGG 181
Query 239 AACTGTTGTCTCTACGATGGCCCTGCACTCCAAAGAGCCATCTACAG 285
||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 AACCGTTGTCTCTACGATGGCCCTGCACTCCAAAGAGCCATCTACAG 228
Score = 87.9 bits (47), Expect = 2e-16
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 284 AGTCCCTCCTCTTGACTCTGAATGGGTTTGGCATTGCCACAGGCTTGATCCGG 336
||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 298 AGTCCCTCCTCTTGACTGTGAATGGGTTTGGCATTGCCACAGGCTTAATCCGG 350
> AT4G38240.1 | Symbols: CGL1, CGL, GNTI | alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
| chr4:17931570-17935325 REVERSE LENGTH=1813
Length=1813
Score = 387 bits (209), Expect = 2e-106
Identities = 242/258 (94%), Gaps = 2/258 (1%)
Strand=Plus/Plus
Query 689 ACAGATGCCCT-TGGCTGCTGTAGTGATTATGGCCCGCAGTCGTACAGACTATCTTGAAA 747
||||||| ||| |||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct 419 ACAGATG-CCTGTGGCTGCTGTAGTGGTTATGGCCTGCAGTCGTGCAGACTATCTTGAAA 477
Query 748 GGACAGTTAAATCAGTTTTAACATATCAAAGTCCCGTTGCCTCAAAACATCCTCTGTTTA 807
|||| ||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||||
Sbjct 478 GGACTGTTAAATCAGTTTTAACATATCAAACTCCCGTTGCTTCAAAATATCCTCTATTTA 537
Query 808 TATCTCAGGATGGATCTGATCAAGCCGTCAAGAGCAAGGCATTGAGTTATAATCAACTAA 867
||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||| |||
Sbjct 538 TATCTCAGGATGGATCTGATCAAGCTGTCAAGAGCAAGTCATTGAGCTATAATCAATTAA 597
Query 868 CATATATGCAGCACTTGGATTTTGAACCAGTGATCACTGAAAGGCCTGGCGAACTGATTG 927
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 598 CATATATGCAGCACTTGGATTTTGAACCAGTGGTCACTGAAAGGCCTGGCGAACTGACTG 657
Query 928 CGTACTACAAGATTGCAC 945
||||||||||||||||||
Sbjct 658 CGTACTACAAGATTGCAC 675
> AT4G40000.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr4:18543893-18547523
REVERSE LENGTH=2528
Length=2528
Score = 237 bits (128), Expect = 2e-61
Identities = 151/162 (93%), Gaps = 2/162 (1%)
Strand=Plus/Plus
Query 10 GGTGGTGGCAAATGATGTTGA-T-TAAAAGATCTAACCTTCTTATTCCCCAAACGAAAAG 67
||||||||| ||||||||||| | |||||||||||| |||||||||| ||||||||||||
Sbjct 719 GGTGGTGGCGAATGATGTTGATTATAAAAGATCTAATCTTCTTATTCACCAAACGAAAAG 778
Query 68 AACATGTACCACCAACTTGATGGTCGCTAACAACGAAGGTCAACATTTCCCCAGCTGCAA 127
||||||||| ||||| ||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 779 AACATGTACGACCAATTTGATGGTCACTAACAACGAAGGTCAACATTTCCCCAGTTGCAA 838
Query 128 CACCAAGAGAACCTTGTCCGTAGCATCTGAGATTAATCCTCA 169
|||||||||||||||||| ||||||||||||| |||||||||
Sbjct 839 CACCAAGAGAACCTTGTCTGTAGCATCTGAGACTAATCCTCA 880
> AT4G38290.1 | Symbols: | Haemolysin-III related integral membrane
protein | chr4:17942871-17944047 FORWARD LENGTH=465
Length=465
Score = 176 bits (95), Expect = 4e-43
Identities = 117/127 (92%), Gaps = 3/127 (2%)
Strand=Plus/Plus
Query 995 GATCCCTGGG-AAATTCGATATAGCTGGACATAGCCATCAGTTGTTTCATGTTCTGATGG 1053
||| || ||| |||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 198 GATGCC-GGGTAAATTCGATATAGCAGGACATAGCCATCAGTTGTTTCATGTTCTGGTAG 256
Query 1054 TTGTTGGTGCGTTCACGCACTATAGAGCTGGGCTTTGTGTATCTTAAGTGGAGAGATATT 1113
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 257 TTGCTGGTGCGTTCACGCACTATAGAGCTGGGCTA-GTGTATCTTAAGTGGAGAGATATT 315
Query 1114 GAAAGAT 1120
||| |||
Sbjct 316 GAAGGAT 322
> AT4G37680.1 | Symbols: HHP4 | heptahelical protein 4 | chr4:17700711-17702753
FORWARD LENGTH=1546
Length=1546
Score = 176 bits (95), Expect = 4e-43
Identities = 117/127 (92%), Gaps = 3/127 (2%)
Strand=Plus/Plus
Query 995 GATCCCTGGG-AAATTCGATATAGCTGGACATAGCCATCAGTTGTTTCATGTTCTGATGG 1053
||| || ||| |||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1232 GATGCC-GGGTAAATTCGATATAGCAGGACATAGCCATCAGTTGTTTCATGTTCTGGTTG 1290
Query 1054 TTGTTGGTGCGTTCACGCACTATAGAGCTGGGCTTTGTGTATCTTAAGTGGAGAGATATT 1113
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1291 TTGCTGGTGCGTTCACGCACTATAGAGCTGGGCTA-GTGTATCTTAAGTGGAGAGATATT 1349
Query 1114 GAAAGAT 1120
||| |||
Sbjct 1350 GAAGGAT 1356
> AT2G40710.1 | Symbols: | Haemolysin-III related integral membrane
protein | chr2:16980943-16981368 REVERSE LENGTH=426
Length=426
Score = 176 bits (95), Expect = 4e-43
Identities = 117/127 (92%), Gaps = 3/127 (2%)
Strand=Plus/Plus
Query 995 GATCCCTGGG-AAATTCGATATAGCTGGACATAGCCATCAGTTGTTTCATGTTCTGATGG 1053
||| || ||| |||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 153 GATGCC-GGGTAAATTCGATATAGCAGGACATAGCCATCAGTTGTTTCATGTTCTGGTAG 211
Query 1054 TTGTTGGTGCGTTCACGCACTATAGAGCTGGGCTTTGTGTATCTTAAGTGGAGAGATATT 1113
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 212 TTGCTGGTGCGTTCACGCACTATAGAGCTGGGCTA-GTGTATCTTAAGTGGAGAGATATT 270
Query 1114 GAAAGAT 1120
||| |||
Sbjct 271 GAAGGAT 277
> AT4G37682.1 | Symbols: | Protein of unknown function (DUF1399)
| chr4:17703381-17704510 FORWARD LENGTH=974
Length=974
Score = 154 bits (83), Expect = 2e-36
Identities = 101/109 (93%), Gaps = 3/109 (3%)
Strand=Plus/Plus
Query 394 TTTCAACTGTCAAGAGACAAAGCCCATTTTACTACCAGGTTTCAAGAGCTCATGTAGATA 453
||||| |||||||||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct 142 TTTCAGCTGTCAAGAGACAAGGCCCGTTTTACTATCAGGTTTCAAGAGCTCATGTAGATA 201
Query 454 ATGATG---TCTTTCTGCAAGAAGCTGTGGCTAGATACAAAGCATTTCT 499
|||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 202 ATGATGACGTCTTTCTGCAAGAAGCTCTGGCTAGATACAAAGCATTTCT 250
> AT4G38320.1 | Symbols: HHP5 | heptahelical protein 5 | chr4:17948692-17950522
FORWARD LENGTH=1432
Length=1432
Score = 128 bits (69), Expect = 1e-28
Identities = 86/94 (91%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 995 GATCCCTGGG-AAATTCGATATAGCTGGACATAGCCATCAGTTGTTTCATGTTCTGATGG 1053
||| || ||| |||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1197 GATGCC-GGGTAAATTCGATATAGCAGGACATAGCCATCAGTTGTTTCATGTTCTGGTTG 1255
Query 1054 TTGTTGGTGCGTTCACGCACTATAGAGCTGGGCT 1087
||| ||||||||| ||||||||||||||||||||
Sbjct 1256 TTGCTGGTGCGTTAACGCACTATAGAGCTGGGCT 1289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54919396230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5