BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944081

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G37510.1 | Symbols:  | Ribonuclease III family protein | chr...   621    2e-177
  AT4G40000.1 | Symbols:  | S-adenosyl-L-methionine-dependent met...   193    2e-48 
  AT2G48121.2 | Symbols:  | LOCATED IN: mitochondrion; BEST Arabi...   158    7e-38 
  AT4G38330.1 | Symbols:  | Integral membrane protein hemolysin-I...  71.3    1e-11 


> AT4G37510.1 | Symbols:  | Ribonuclease III family protein | chr4:17626104-17628947 
REVERSE LENGTH=1862
Length=1862

 Score =  621 bits (336),  Expect = 2e-177
 Identities = 352/360 (98%), Gaps = 0/360 (0%)
 Strand=Plus/Plus

Query  1     GAGGATGTAGATTATGTTTCTGTTGAATTTGAAGGCAAAAAGCTAGGTTGGCAAGATATT  60
             ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  1030  GAGGATGTAGATTATGTTTCTGTTGAATTTGAAGGGAAAAAGCTAGGTTGGCAAGATATT  1089

Query  61    GCTACTTAAAAGCCTCCTGAAGATGCTTTATTCGCACACCCGAGGCTATTCAGAGCTTGT  120
             |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1090  GCTACTTACAAGCCTCCTGAAGATGCTTTATTCGCACACCCTAGGCTATTCAGAGCTTGT  1149

Query  121   GTTCCACCGGGAATGCATCGTTTCAGAGGGAACATATGGGATTTTGACAGCAAACCTAAA  180
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1150  GTTCCACCGGGAATGCATCGTTTCAGAGGGAACATATGGGATTTTGACAGCAAACCAAAA  1209

Query  181   GTTATGCAGACCCTCGGATACCCTTTACCGATGAATGATAGAATCAAGGAGATAACTGAA  240
             ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  1210  GTTATGCAGACCCTCGGATACCCTTTAACGATGAATGATAGAATCAAGGAGATAACTGAA  1269

Query  241   GCAAGAAACATTGAACTTGGACTCGGTTTACAGCTCTGCTTCTTGCATCCTTCAAAGCAC  300
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  1270  GCAAGAAACATCGAACTTGGACTCGGTTTACAGCTCTGCTTCTTGCATCCTTCAAAGCAT  1329

Query  301   AAGTTTGAACACCCGCGGTTTTGTTTTGAGCGGCTGGAATACGTAGGACAGAAGATACAG  360
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1330  AAGTTTGAACACCCGCGGTTTTGTTTTGAGCGGCTGGAATATGTAGGACAGAAGATACAG  1389


> AT4G40000.1 | Symbols:  | S-adenosyl-L-methionine-dependent methyltransferases 
superfamily protein | chr4:18543893-18547523 
REVERSE LENGTH=2528
Length=2528

 Score =  193 bits (104),  Expect = 2e-48
 Identities = 149/168 (89%), Gaps = 13/168 (8%)
 Strand=Plus/Plus

Query  359  AGATTCAACTGAAATTGGAGAATGATTTCATGAAATCTCTTCAGGCTGAGGCTATAGAGA  418
            |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  352  AGATTCGACTGAAATTGGAGAATGATTTCATGATATCTCTTCAGGCTGAGGCTATAGAGA  411

Query  419  GTGGTGAATTGGAGGCTATCAAGCCTTTGCCTTGGTACCCTAAGAATCTT--T---C-TT  472
            |||||||||||||||||||||||||| |||||||||| ||||||||||||  |   | ||
Sbjct  412  GTGGTGAATTGGAGGCTATCAAGCCTCTGCCTTGGTATCCTAAGAATCTTGCTTGGCATT  471

Query  473  -T--T----CACGCAAGGAGATTAGAAAAAACCAGATACTTGAGAGGT  513
             |  |    |||||||||||||||| |||||||||| |||||||||||
Sbjct  472  CTAATTTTTCACGCAAGGAGATTAGGAAAAACCAGACACTTGAGAGGT  519


> AT2G48121.2 | Symbols:  | LOCATED IN: mitochondrion; BEST Arabidopsis 
thaliana protein match is: Ribonuclease III family 
protein (TAIR:AT4G37510.1). | chr2:19681817-19682391 FORWARD 
LENGTH=479
Length=479

 Score =  158 bits (85),  Expect = 7e-38
 Identities = 89/91 (98%), Gaps = 0/91 (0%)
 Strand=Plus/Plus

Query  270  ACAGCTCTGCTTCTTGCATCCTTCAAAGCACAAGTTTGAACACCCGCGGTTTTGTTTTGA  329
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  23   ACAGCTCTGCTTCTTGCATCCTTCAAAGCATAAGTTTGAACACCCGCGGTTTTGTTTTGA  82

Query  330  GCGGCTGGAATACGTAGGACAGAAGATACAG  360
            |||||||||||| ||||||||||||||||||
Sbjct  83   GCGGCTGGAATATGTAGGACAGAAGATACAG  113


> AT4G38330.1 | Symbols:  | Integral membrane protein hemolysin-III 
homolog | chr4:17951470-17952763 FORWARD LENGTH=636
Length=636

 Score = 71.3 bits (38),  Expect = 1e-11
 Identities = 47/51 (92%), Gaps = 1/51 (2%)
 Strand=Plus/Plus

Query  368  TGAAATTGGAGAATGATTTCATGAAATCTCTTCAGGCTGAGGCTATAGAGA  418
            ||||||||||||||||||||||||||||||||| ||||||| | | |||||
Sbjct  143  TGAAATTGGAGAATGATTTCATGAAATCTCTTCGGGCTGAG-CGAGAGAGA  192



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28633463790


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5