BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944084 Length=545 Score E Sequences producing significant alignments: (Bits) Value AT4G37660.1 | Symbols: | Ribosomal protein L12/ ATP-dependent ... 828 0.0 > AT4G37660.1 | Symbols: | Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein | chr4:17695496-17696270 FORWARD LENGTH=775 Length=775 Score = 828 bits (448), Expect = 0.0 Identities = 502/528 (95%), Gaps = 3/528 (1%) Strand=Plus/Plus Query 1 CCTCCATTCACCGGCGAAAAATGCGAGCTCCGATCTCCGG-ATTTCTCTCGAGATCCCTC 59 |||||||||||||||| ||||||||||||||||||||||| |||| |||||||||| ||| Sbjct 29 CCTCCATTCACCGGCG-AAAATGCGAGCTCCGATCTCCGGAATTT-TCTCGAGATCTCTC 86 Query 60 GGATACCTCCACCGTACGACGCCTCTAACCGCCGCTACTCGCCACCTATGCGCCGTCGCT 119 || |||||||||||||||||||| ||| || |||||||||| |||||||||||||||||| Sbjct 87 GGTTACCTCCACCGTACGACGCCGCTATCCTCCGCTACTCGTCACCTATGCGCCGTCGCT 146 Query 120 TCTCCCGAAGCTCGAACGAAGAAACTCGAGCGAATCGCCGACGATTTACTCAAACTGAAT 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 147 TCTCCCGAAGCTCGAACGAAGAAACTCGAGCGAATCGCCGACGATTTACTCAAACTGAAT 206 Query 180 CGGATTGAGCTTTACGATTACTCAATCCTCTTCAGCCATAAACTCGGTCTCAATCGCTAC 239 |||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| Sbjct 207 CGGATTGAGCTTTACGATTACTCACTCCTCTTCAGCCATAAAATAGGTCTCAATCGCTAC 266 Query 240 GGTTCCGCCGTAGCTGTTGCCGGATCTGACGGCGAGGCATCAGGTTCTACGGAGACCAAA 299 |||||||||||||||||| ||||||||| |||||| || |||| |||||||||||| ||| Sbjct 267 GGTTCCGCCGTAGCTGTTACCGGATCTGTCGGCGACGCGTCAGCTTCTACGGAGACGAAA 326 Query 300 ACGGCGGAGAAGACTGCTTTCGATGTGAAGCTTGAGAAATTCGAAACGGCTTCGAAGATC 359 ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 327 ACGGCGGAGAAGACTACTTTCGATGTGAAGCTTGAGAAATTCGAAGCGGCTTCGAAGATT 386 Query 360 AAAGTGATAAAAGAGATCAGAGCGTTCACGGATCTGGGATTGAAAGAAGCTAAGGAATTG 419 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 387 AAAGTGATAAAAGAGATCAGAGCATTCACGGATCTGGGATTGAAAGAAGCTAAGGCTTTG 446 Query 420 GTTGAGAAAGCTCCAGTGATTGTGAAGAAAGGTCTTACTAAAGAAGAAGCTGAGAAGATC 479 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 447 GTTGAGAAAGCCCCAGTGATTGTGAAGAATGGTCTTACTAAAGAAGAAGCTGAGAAGATC 506 Query 480 ATGGAGAAACTCAAAGCGGTTGGTGCTATTGTAGCTTTGGAATGAAAC 527 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 507 ATGGAGAAACTCAAAGCGGTTGGTGCTATTGTAGCTTTGGAATGAAAC 554 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26121756440 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5