BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944084

Length=545
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G37660.1 | Symbols:  | Ribosomal protein L12/ ATP-dependent ...   828    0.0  


> AT4G37660.1 | Symbols:  | Ribosomal protein L12/ ATP-dependent 
Clp protease adaptor protein ClpS family protein | chr4:17695496-17696270 
FORWARD LENGTH=775
Length=775

 Score =  828 bits (448),  Expect = 0.0
 Identities = 502/528 (95%), Gaps = 3/528 (1%)
 Strand=Plus/Plus

Query  1    CCTCCATTCACCGGCGAAAAATGCGAGCTCCGATCTCCGG-ATTTCTCTCGAGATCCCTC  59
            |||||||||||||||| ||||||||||||||||||||||| |||| |||||||||| |||
Sbjct  29   CCTCCATTCACCGGCG-AAAATGCGAGCTCCGATCTCCGGAATTT-TCTCGAGATCTCTC  86

Query  60   GGATACCTCCACCGTACGACGCCTCTAACCGCCGCTACTCGCCACCTATGCGCCGTCGCT  119
            || |||||||||||||||||||| ||| || |||||||||| ||||||||||||||||||
Sbjct  87   GGTTACCTCCACCGTACGACGCCGCTATCCTCCGCTACTCGTCACCTATGCGCCGTCGCT  146

Query  120  TCTCCCGAAGCTCGAACGAAGAAACTCGAGCGAATCGCCGACGATTTACTCAAACTGAAT  179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  147  TCTCCCGAAGCTCGAACGAAGAAACTCGAGCGAATCGCCGACGATTTACTCAAACTGAAT  206

Query  180  CGGATTGAGCTTTACGATTACTCAATCCTCTTCAGCCATAAACTCGGTCTCAATCGCTAC  239
            |||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||
Sbjct  207  CGGATTGAGCTTTACGATTACTCACTCCTCTTCAGCCATAAAATAGGTCTCAATCGCTAC  266

Query  240  GGTTCCGCCGTAGCTGTTGCCGGATCTGACGGCGAGGCATCAGGTTCTACGGAGACCAAA  299
            |||||||||||||||||| ||||||||| |||||| || |||| |||||||||||| |||
Sbjct  267  GGTTCCGCCGTAGCTGTTACCGGATCTGTCGGCGACGCGTCAGCTTCTACGGAGACGAAA  326

Query  300  ACGGCGGAGAAGACTGCTTTCGATGTGAAGCTTGAGAAATTCGAAACGGCTTCGAAGATC  359
            ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct  327  ACGGCGGAGAAGACTACTTTCGATGTGAAGCTTGAGAAATTCGAAGCGGCTTCGAAGATT  386

Query  360  AAAGTGATAAAAGAGATCAGAGCGTTCACGGATCTGGGATTGAAAGAAGCTAAGGAATTG  419
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||
Sbjct  387  AAAGTGATAAAAGAGATCAGAGCATTCACGGATCTGGGATTGAAAGAAGCTAAGGCTTTG  446

Query  420  GTTGAGAAAGCTCCAGTGATTGTGAAGAAAGGTCTTACTAAAGAAGAAGCTGAGAAGATC  479
            ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  447  GTTGAGAAAGCCCCAGTGATTGTGAAGAATGGTCTTACTAAAGAAGAAGCTGAGAAGATC  506

Query  480  ATGGAGAAACTCAAAGCGGTTGGTGCTATTGTAGCTTTGGAATGAAAC  527
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  507  ATGGAGAAACTCAAAGCGGTTGGTGCTATTGTAGCTTTGGAATGAAAC  554



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26121756440


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5