BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944101

Length=382
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G18485.1 | Symbols:  | Pentatricopeptide repeat (PPR) superf...  63.9    1e-09
  AT4G34890.1 | Symbols: ATXDH1, XDH1 | xanthine dehydrogenase 1 ...  58.4    5e-08


> AT1G18485.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfamily 
protein | chr1:6363172-6366235 FORWARD LENGTH=3064
Length=3064

 Score = 63.9 bits (34),  Expect = 1e-09
 Identities = 39/41 (95%), Gaps = 1/41 (2%)
 Strand=Plus/Plus

Query  307  GGAGAAATGATGATGGTGCGTTTATGCCGGATGTTGCTACA  347
            ||| ||||| |||||||||||||||||||||||||||||||
Sbjct  843  GGA-AAATGGTGATGGTGCGTTTATGCCGGATGTTGCTACA  882


> AT4G34890.1 | Symbols: ATXDH1, XDH1 | xanthine dehydrogenase 
1 | chr4:16618573-16625057 REVERSE LENGTH=4323
Length=4323

 Score = 58.4 bits (31),  Expect = 5e-08
 Identities = 33/34 (97%), Gaps = 0/34 (0%)
 Strand=Plus/Minus

Query  265  CCCAACTCCCTCAATGGATATTACATGCATCCCT  298
            ||||| ||||||||||||||||||||||||||||
Sbjct  380  CCCAAGTCCCTCAATGGATATTACATGCATCCCT  347



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17995854142


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5