BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944104
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37470.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1266 0.0
> AT4G37470.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr4:17616659-17618473 REVERSE LENGTH=1309
Length=1309
Score = 1266 bits (685), Expect = 0.0
Identities = 803/860 (93%), Gaps = 8/860 (1%)
Strand=Plus/Plus
Query 1 CCAGGGAAGAA---TCTTTAAAGAGATGGGTGTGGTAGAGGAAGCTCACAACGTGAAGGT 57
|||| |||||| |||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 86 CCAGAGAAGAATCTTCTTTAGAGAGATGGGTGTGGTAGAAGAAGCTCACAACGTGAAGGT 145
Query 58 GATTGGTTCAGGAGATCAAGCCACGATCGTGTTAGGTCACGGGTTCGGCACGGACCAGTC 117
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 146 GATTGGTTCAGGAG---AAGCCACGATCGTGTTAGGTCACGGGTTCGGCACGGACCAGTC 202
Query 118 AGTATGGAAACACCTGGTTCCACATCTGGTCGACGATTACCGCATCGTGCTTTACGACAA 177
||||||||||||| ||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct 203 AGTATGGAAACACTTGGTTCCACATCTGGTCGACGATTACCGCGTCGTCCTCTACGACAA 262
Query 178 CATGGGAGCCGGTACGACAAACCCTGACTATTTTGACTTCGATCGTTACTCGAATCTCGA 237
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 263 CATGGGAGCCGGTACGACCAACCCTGACTATTTCGACTTCGATCGTTACTCAAATCTCGA 322
Query 238 AGGTTACTCTTTCGATTTGATTGCAATCTTAGAAGATCTCAAGGTTGAGTCTTGTATCTT 297
||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 323 AGGCTACTCTTTCGATTTGATTGCAATCTTGGAAGATCTCAAGATTGAGTCTTGTATCTT 382
Query 298 TGTTGGTCACTCTGTTTCTGCCATGATTGGTATCTTGGCTTCTCTTAACCGTCCTGATCT 357
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 383 TGTTGGCCACTCTGTTTCTGCCATGATTGGTGTCTTGGCTTCTCTTAACCGTCCTGATCT 442
Query 358 CTTCTCCAAAATCGTCATGATTTCTGCTTCTCCAAGATACGTAAACGATGTTGATTACCA 417
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 443 CTTCTCCAAAATCGTCATGATCTCTGCTTCTCCGAGATACGTAAACGATGTTGATTACCA 502
Query 418 AGGTGGATTCGAACAAGAAGACTTAAACCAACTCTTTGAAGCGATCCGAAGCAACTACAA 477
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 503 AGGTGGATTCGAACAAGAAGACTTAAACCAACTATTCGAAGCCATCCGAAGCAACTACAA 562
Query 478 AGCGTGGTGCTTAGGTTTCGCTCCACTCGCCGTCGGTGGAGACTTAGACTCAATCGCCGT 537
||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||||||
Sbjct 563 AGCGTGGTGCTTAGGTTTCGCTCCACTCGCCGTCGGTGGCGACATGGACTCCATCGCCGT 622
Query 538 TCAAGAATTCAGCAGAACACTCTTCAACATGCGTCCCGACATTGCTCTTTCTGTTG-CTC 596
||||||||||||||||||||||||||| |||||||||||||| ||||| || || | | |
Sbjct 623 TCAAGAATTCAGCAGAACACTCTTCAATATGCGTCCCGACATAGCTCTCTCCGTCGGC-C 681
Query 597 AGACCATTTTCCAAAGTGACATGAGACAGATCTTACCTTATGTCTCTGTTCCTTGTCACA 656
||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||
Sbjct 682 AGACCATTTTCCAAAGTGACATGAGACAGATCTTACCTTTTGTCACTGTTCCGTGTCACA 741
Query 657 TTCTTCAAAGTGTTAAGGACTTAGCCGTACCAGTCGTCGTCTCCGAGTATCTTCACGCCA 716
|||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 742 TTCTCCAAAGTGTTAAGGACTTAGCTGTACCAGTCGTTGTCTCCGAGTATCTTCACGCCA 801
Query 717 ATCTTGGATCTGAATCCGTCGTTGAAGTTATTCCTTCTGATGGTCATCTTCCTCAGCTTA 776
||||||| | |||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 802 ATCTTGGCTGTGAATCCGTCGTCGAGGTTATTCCTTCTGATGGTCATCTTCCTCAGCTTA 861
Query 777 GCTCGCCGGATACTGTTATTCCCGTTATCCTCCGTCACATTCGTAATGACATTGCTGTGT 836
|||| || ||| |||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 862 GCTCACCAGATTCTGTTATTCCTGTCATCCTCCGTCACATTCGTAATGACATTGCTATGT 921
Query 837 GATTGTGAGAAATGTAGTTA 856
|||||| ||| || || |||
Sbjct 922 GATTGTAAGAGATTTAATTA 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5