BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944112
Length=1811
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37420.1 | Symbols: | Domain of unknown function (DUF23) | ... 2523 0.0
> AT4G37420.1 | Symbols: | Domain of unknown function (DUF23)
| chr4:17593123-17594889 FORWARD LENGTH=1767
Length=1767
Score = 2523 bits (1366), Expect = 0.0
Identities = 1635/1768 (92%), Gaps = 6/1768 (0%)
Strand=Plus/Plus
Query 22 ATGACGTTATCCTTCAAGActtcttcttcttcttctCCTCGATTAACACCAAAATCCATC 81
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACGTTATCCTTCAAGACTTGTTCTTCTTCTTCTCCTCGATTAACACCAAAATCCATC 60
Query 82 GCCGGAGCTGGAGACGATGCTTCTCAATTCTTCCATCACAAGACGAGTTACAGAGCACAC 141
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 GCCGGAGCAGGAGACGATGCTTCTCAATTCTTCCATCACAAGACAAGTTACAGAGCACAC 120
Query 142 ACAACCActctcttcttcatcctcgtttctctctccctcttcggtttcttctctctctAT 201
|||||||| ||||||||||||||||||||||| || ||||| |||||| ||||||| |||
Sbjct 121 ACAACCACACTCTTCTTCATCCTCGTTTCTCTTTCTCTCTTTGGTTTCATCTCTCTTTAT 180
Query 202 TGTTCCCCAAACACGATTTATCGAGCTGCCTCCTTCCCCACGACACGCCCCTCTAAATCA 261
| |||||| |||||||||||||||||||||| ||| ||||||||||||| ||||||||
Sbjct 181 TATTCCCCCAACACGATTTATCGAGCTGCCTTCTTTGCCACGACACGCCCAGCTAAATCA 240
Query 262 AGAATCGTTAGTTACGTGATCAACACTCAAGATTCAAGCCATCATCAATTATCCAACGGT 321
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 AGATTCGTTAGTTACGTGATCAACACTCAAGATTCAAATCATCATCAATTATCCAACGGT 300
Query 322 TCTCGTAGGATAAGAGCCGAAGCTGTTCTCTGGCCAGGATGGGATATTCTGGTGATCGTT 381
|| |||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 301 TCACGTAGGATCAGAGCCGAAGCTGTTCTCTGGCCAGGATGGGAGATTCTAGTGATCGTT 360
Query 382 TCGCCGGAGGAAAAAGTTATGCCGCCGCAGCTTCCAGGAGAGAATTACACATGTTTTTAC 441
|| |||||||| |||| || ||| |||| | |||||||||||||||||| ||||||||||
Sbjct 361 TCACCGGAGGAGAAAGCTAAGCCACCGCCGTTTCCAGGAGAGAATTACATATGTTTTTAC 420
Query 442 CCTAACGGAGAGAAATCCATAGCGAGATTCGCGGCGATTCTGCCTTTCTCGAACCGTACA 501
||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||| ||
Sbjct 421 CCTAACGGAGAGAAATCCACGGCGAGATTCGCCGCGATTCTCCCTTTCTCAAACCGTGCA 480
Query 502 TCATTCAGATGCAGTCTTCCCGGAATTTATCGCCACCACCATCCGATTCCGACTCCGATC 561
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 TCATTCAGATGCAGTCTTCCCGGAATTTATCGCCACCACCATCCAATTCCGACTCCGATC 540
Query 562 CTCGCTTCTTCGAAAACGTTCCAACTTTCACCGGAAACCCGTTGGCCTGATCTACCTCTA 621
||||| |||||||||| |||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 541 CTCGCCTCTTCGAAAAGGTTCCAACTTTCGCCGGAAACACGTTGGCCTGATCTCCCTCTA 600
Query 622 TGGAATTTCGTAGTTTTCGAAGCCATTTCCACGGAAAACGACGTCGTTCTCTTCGTCAAG 681
||||||||||| ||||||||||||||||| || |||| ||||||||||||||| ||||||
Sbjct 601 TGGAATTTCGTCGTTTTCGAAGCCATTTCAACAGAAACCGACGTCGTTCTCTTAGTCAAG 660
Query 682 GGGCCGAATCGTGGACTAGGCTCCAATAAACCGCCGGAGTCGTTTCGTTGTGTGTTTGGC 741
|||||||| |||||| |||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 661 GGGCCGAACCGTGGATTAGGTTCCAATAAACCACCGGAGTCGTTTCGGTGTGTGTTTGGT 720
Query 742 GAGGAATCCGATACGGCCATCCGAACCGCCGTGACGAGTTCCGTGCAAGAGGTGTTCCGA 801
||||| |||||||| ||||| ||||||||||||| || || || |||||||||||||||
Sbjct 721 GAGGAGTCCGATACAGCCATTAGAACCGCCGTGACTAGCTCGGTCCAAGAGGTGTTCCGA 780
Query 802 TGCTCATTACCGGACATAACGATCGATACGCCGATCAAAATATACCTCGAGGCCGTAGCA 861
|| ||||||||| |||||||||||||||| ||| ||||||| ||||| ||||| || |||
Sbjct 781 TGTTCATTACCGAACATAACGATCGATACTCCGGTCAAAATCTACCTTGAGGCGGTGGCA 840
Query 862 ACCGATAAAGAGGAGACAAAGACCATCCCGTCGGTGGCGTACTATACCCCCAAGCACACT 921
|||| |||||| |||||||||||| |||||||||||||||| |||| |||||||| |||
Sbjct 841 ACCGGTAAAGAAGAGACAAAGACCGTCCCGTCGGTGGCGTATTATAGCCCCAAGCGCACG 900
Query 922 TTAGCGGAGCCACGTGAGAAAGT-GCTATTGTGCGCGACGACGATGGTGTACAATGTAGC 980
|||| ||| |||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 901 TTAGTGGAACCACGTGAGAAA-TCGCTATTGTGCGCGACGACGATGGTGTACAATGTAGC 959
Query 981 AAAGTATCTGAGAGAGTGGGTGATGTATCACGCAGCGATCGGAATACAGAGATTCATCAT 1040
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 960 AAAGTATCTGAGAGAGTGGGTGATGTATCACGCGGCGATCGGAATACAGAGATTCATAAT 1019
Query 1041 ATACGATAACGGTAGCGACGACGAGTTAAACGACGTCGTTGAAGTGCTTAATAGTGAAAA 1100
||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||
Sbjct 1020 ATACGATAACGGTAGCGACGATGAGTTAAACGACGTCGTTAAAGGGCTTAATAGTGAAAA 1079
Query 1101 ATATGACGTCATCAAAGTTTTATGGATCTGGCCCAAGACCCAAGAGGCTGGGTTCTCCCA 1160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATATGACGTCATCAAAGTTTTATGGATCTGGCCCAAGACCCAAGAGGCTGGGTTCTCCCA 1139
Query 1161 CGCGGCGGTGTATGGTAATGATACATGCACCTGGATGATGTATCTTGATGTAGACGAGTT 1220
||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1140 CGCGGCGGTGTATGGAAACGATACGTGCACCTGGATGATGTATCTTGACGTAGACGAGTT 1199
Query 1221 TCTCTTCTCTCCGGCTTGGGATAAACAATCACAGCCATCGGATCGGATGATTAGGTCTCT 1280
||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||
Sbjct 1200 TCTCTTCTCTCCGGCTTGGGATAAACAATCACAACCGTCGGATCAGATGATTAGGTCTCT 1259
Query 1281 TCTACCGTCAAATCATAGCATGATCGGACAAGTGTCGTTTAAATCACACGAGTTTGGACC 1340
||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1260 TCTACCGTCGGATCAGAGCATGATTGGACAAGTGTCGTTTAAATCACACGAGTTTGGACC 1319
Query 1341 GTCTAATCAGACAAAGCATCCACGTGAAGGTGTGACACAAGGTTACACGTGTCGACGAGA 1400
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1320 GTCTAATCAGACAAAGCATCCACGTGGAGGTGTGACACAAGGTTACACGTGTCGACGAGA 1379
Query 1401 GGAAGATCAACGGCACAAGTCGATCGTGCGGCTGAGCGTGGTGGAGCATTCTCTTTACAC 1460
|||||||||||||||||||||||||||||||| |||| ||| ||||| || ||||||||
Sbjct 1380 AGAAGATCAACGGCACAAGTCGATCGTGCGGCTAAGCGCGGTAGAGCACTCGCTTTACAC 1439
Query 1461 GGCGATCCACCACTTCGGTTTAAAGGGAGAGTATGAGTGGCGCGTGGCGGACACGGAAGA 1520
||| ||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| ||
Sbjct 1440 GGCCATCCACCACTTCGGTTTGAAGAGAGAGTACGAGTGGCGCGTGGCGGACACGGAGGA 1499
Query 1521 GGGGGTGGTGAACCATTACAAGTACCAAGCATGGCGGGAGTTCAAGGCCAAGTTCAAACG 1580
||| |||||||||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct 1500 GGGAGTGGTGAACCATTACAAGTACCAAGCGTGGCAAGAGTTCAAGGCCAAGTTTAAACG 1559
Query 1581 GCGCGTGTCAGCTTACGTGGTGGATTGGACTAGAGTTTCTAATCCTAAGTCGAGAGATCG 1640
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1560 GCGTGTGTCGGCTTACGTGGTGGATTGGACTAGAGTCTCTAATCCTAAGTCGAGAGATCG 1619
Query 1641 AACTCCTGGGCTGGGCTTTAAGCCCGTTGAGCCGGACGGATGGGC-CTACAAGTTTTGTG 1699
|||||||||| ||||||||| ||||||||| ||||| |||||||| | | ||||||||||
Sbjct 1620 AACTCCTGGGTTGGGCTTTAGGCCCGTTGAACCGGAAGGATGGGCTC-ATAAGTTTTGTG 1678
Query 1700 AAGTC-ATGGATCTGAGGTTGAAGAGGTTAACCAAAAAATGGTTTGGGTACCCGGTTAAA 1758
||||| | |||| |||| ||||||| ||||||| |||||||||||||||||| ||||||
Sbjct 1679 AAGTCGA-GGATTTGAGATTGAAGATATTAACCAGAAAATGGTTTGGGTACCCAGTTAAA 1737
Query 1759 AACGGTTATAGAATGGCATGGCAGAGAT 1786
||||||||||| ||||||||||||||||
Sbjct 1738 AACGGTTATAGGATGGCATGGCAGAGAT 1765
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89607972825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5