BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944128
Length=566
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37300.1 | Symbols: MEE59 | maternal effect embryo arrest 59... 881 0.0
> AT4G37300.1 | Symbols: MEE59 | maternal effect embryo arrest
59 | chr4:17554641-17555861 FORWARD LENGTH=1049
Length=1049
Score = 881 bits (477), Expect = 0.0
Identities = 534/561 (95%), Gaps = 5/561 (1%)
Strand=Plus/Plus
Query 1 AAAGCAGTGGACAGAGAAGACGATGAGTACGATGAAGCCAAGTCGGAGCGACGAAATATC 60
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 143 AAAGCAGTGGACAGAGACGACGATGAGTACGATGAAGCCAAGCCGGAGCGACGAAATATC 202
Query 61 CGACCCGGATCAACAGATCAAGAACGCGAACCAGATCAGAGCTGATTTCGATTCCTTGGC 120
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 CGACCCGGAACAGCAGATCAAGAACGCGAACCAGATCAGAGCTGATTTCGATTCCTTGGC 262
Query 121 TCCCAAACGACCCACTAAACCCACTCGAAGCGAACCGGGACCTCCTGGATCTTTCTCTGC 180
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 263 TCCCAAACGACCCACTAAACCCACTCGAAGCGAACCGGGATTTCCTGGATCTTTCTCTGC 322
Query 181 CTCCGACAAAACCACCGACCATCCTGAAGCTGACAAATTCAAATCTCTCCAGTCACAAAC 240
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 323 TTCCGACAAAATCACCGACCATCCTGAAGCTGACAAATTCCAATCTCTCCAGTCACAAAC 382
Query 241 TCATGGTAAAGTTCTAGGTGAGGGGGATTCATCTGCAGTTCAAGATGAGTTCTTGGAAAC 300
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 383 TCATGGTAAAGTTCTAGGTGAGGGAGATTCATCTGCAGTTCAAGATGAGTTCCTGGAAAC 442
Query 301 AGAGTATTACACAAATCTCACTGCCATTGATAAGCAACATCACACGACCGGAAGTGGGTT 360
|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 443 AGAGTATTACTCAAATCTCACCGCCATTGATAAGCAACATCACACGACCGGAAGTGGGTT 502
Query 361 TATAAATGTGGTCAAGGAAGACGGA-GGTGAAGCGA-CCGAGGCCGTAACCGCCGCCGCA 418
|||||||||||| ||||||||| | ||||||| | |||||||||||||||||||||||
Sbjct 503 TATAAATGTGGTGAAGGAAGACA-ACGGTGAAGA-ATCCGAGGCCGTAACCGCCGCCGCA 560
Query 419 ATCGGAGACGGAGAAGAAAAAGCGGTTTACAGAAGCAATCCGGCGACGAACGAATGGATT 478
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 ATCGGAGACGGAGGAGAAAAAGCGGTTTACAGAAGCAATCCGGCGACGAACGAATGGATT 620
Query 479 CCTGCGGCGGAGGAAGATTTTGATTCCGAGTCTTCCTCTAAACCAAACCGGAGCGAGAGT 538
|||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 621 CCTGCGACGGAGGAAGATTTTGATTCGGAATCTTCGTCTAAACCAAACCGGAGCGAGAGT 680
Query 539 TCTTGAATTGATCTTTC-AAA 558
||||||| ||||||||| |||
Sbjct 681 TCTTGAACTGATCTTTCGAAA 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27176673527
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5