BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944130

Length=298
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G37290.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   409    9e-114


> AT4G37290.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: response to karrikin; LOCATED 
IN: endomembrane system; EXPRESSED IN: cotyledon, hypocotyl, 
leaf; EXPRESSED DURING: LP.04 four leaves visible; BEST 
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G23270.1); 
Has 30201 Blast hits to 17322 proteins in 
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; 
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes 
- 2996 (source: NCBI BLink). | chr4:17549684-17550257 REVERSE 
LENGTH=574
Length=574

 Score =  409 bits (221),  Expect = 9e-114
 Identities = 275/300 (92%), Gaps = 7/300 (2%)
 Strand=Plus/Plus

Query  1    GAGTTAAAGTGTTCTTAAACATGATGATGATCAACAAAGCCGTTCTTG-GTTCGATCCTG  59
            |||||||| ||||||||||||||||||||| ||| |||  ||||| || ||||||| |||
Sbjct  55   GAGTTAAATTGTTCTTAAACATGATGATGAACAA-AAA--CGTTC-TGAGTTCGATTCTG  110

Query  60   GTCTTCATGTTGATCGGTTCAGTTCTTGTTGAGAGTCGTCCGCTTGGTCTAACAAAGACC  119
             ||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct  111  TTCTTCATGTTGATTGGTTCGGTTCTTGTCGAGAGTCGTCCGCTTGGTCTAACAAAGACC  170

Query  120  GAGGAGAAGCTCGTGGCTGGTTTCTTCGATGGCTTGTCACTTGGTTCGATAAAAGACTCA  179
            ||||||||| |||||||| |||| ||||||||||| |||||||||||||| |||||||||
Sbjct  171  GAGGAGAAGTTCGTGGCTAGTTTATTCGATGGCTTATCACTTGGTTCGATCAAAGACTCA  230

Query  180  GGTCCGAGTCCAGGCGAGGGTCACAAGGTCGTGGA-ACGGAGGGATACGTTTCGATTTGA  238
            ||||| ||||||||||||||||| ||||||||||| | ||| ||||||||||||||||| 
Sbjct  231  GGTCCAAGTCCAGGCGAGGGTCATAAGGTCGTGGACA-GGAAGGATACGTTTCGATTTGT  289

Query  239  TAAGCACTCCGGTCCAAGCCCAAGCGGACCGGGTCACTAATGTTTCAATCTTTAGTTCAA  298
            ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  290  TAAGCACTCAGGTCCAAGCCCAAGCGGACCGGGCCACTAATGTTTCAATCTTTAGTTCAA  349



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13773363226


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5