BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944131
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37280.1 | Symbols: | MRG family protein | chr4:17546584-17... 1594 0.0
> AT4G37280.1 | Symbols: | MRG family protein | chr4:17546584-17549424
REVERSE LENGTH=1189
Length=1189
Score = 1594 bits (863), Expect = 0.0
Identities = 933/968 (96%), Gaps = 0/968 (0%)
Strand=Plus/Plus
Query 18 ACAATGGGAAGCTCGTCGAAGGAAGAGACGGCGAGTGATGGAGATACGGCGAGCGGTGGC 77
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 60 ACAATGGGAAGCTCGTCGAAGGAAGAGACGGCGAGTGACGGAGATACGGCGAGCGGTGGC 119
Query 78 GCCTCACCGTCCAACGACGGCAGACTCTTCTCGGAGGGCGAACGTGTTCTCGCCTACCAT 137
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 120 GCCTCACCGTCCAACGACGGCAGACTCTTCTCGGAGGGCGAGCGTGTTCTCGCTTACCAT 179
Query 138 GGTCCTCGCGTCTACGGAGCCAAGGTTCAAAAGGTCGAGCTTCGGAAAAAGGAGTGGAAA 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GGTCCTCGCGTCTACGGAGCCAAGGTTCAAAAGGTCGAGCTTCGGAAAAAGGAGTGGAAA 239
Query 198 TACTTTGTTCACTATCTTGGTTGGAACAAAAATTGGGATGAATGGGTTAGCGCGGATAGG 257
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 TACTTTGTGCACTATCTTGGTTGGAACAAAAATTGGGATGAATGGGTTAGTGCGGATAGA 299
Query 258 TTGTTGAAACATACTGAGGAGAACCTTGTGAAACAGAAAGCTCTAGACAAAAAGCAAGGA 317
|||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 300 TTGTTGAAACATACCGAGGAGAATCTTGTCAAACAGAAAGCTCTAGACAAAAAGCAAGGA 359
Query 318 GTAGAAAAAGGTACCAAGTCTGGGCGTTCGGCTCAGACAAAAACTAGAAGCTCTGCAGAC 377
|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 360 GTTGAAAAAGGTACCAAGTCTGGCCGTTCCGCTCAGACAAAAACTAGAAGCTCTGCAGAC 419
Query 378 ACAAAGGCTGATAAAGATGACACGAAGACCAATGCTGCAAAAGGGAAGAAACGAAAGCAC 437
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 420 ACAAAGGCTGATAAAGATGACACCAAGACCAATGCTGCAAAAGGGAAGAAACGAAAGCAC 479
Query 438 GAGTCCGGCAATGAGAAGGATAACGTATCGGCAGAGAAGCTAATGAAGATCCAAATTCCC 497
||||| ||||||||||||||||| ||| |||| |||||||||||||||||||||||||||
Sbjct 480 GAGTCAGGCAATGAGAAGGATAATGTAACGGCGGAGAAGCTAATGAAGATCCAAATTCCC 539
Query 498 GCAACACTTAAAAAGCAGCTCATTGACGACTGGGAGTATATTGCGCAGAAGGACAAGGTT 557
||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 GCATCACTTAAAAAGCAACTCACTGACGACTGGGAGTATATTGCGCAGAAGGACAAGGTT 599
Query 558 GTGAAACTTCCTCGTTCACCTAATGTCGATGAGATATTGGCCAAGTACCTTGAATTCAAA 617
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 600 GTGAAACTTCCTCGTTCACCTAACGTCGATGAGATATTGTCCAAGTACCTTGAATTCAAA 659
Query 618 ACCAAGAAGGATGGAATGATAACTGATTCGGTCGCTGAAATTTTGAAAGGCATAAGGAGT 677
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 660 ACCAAGAAGGATGGAATGGTAACTGATTCGGTCGCTGAAATATTGAAAGGCATAAGGAGT 719
Query 678 TATTTCGACAAGGCATTACCAGTGATGCTCTTATATAAGAAAGAGCGGCGACAATACCAA 737
||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||
Sbjct 720 TATTTCGACAAGGCATTGCCAGTGATGCTCCTATATAAGAAAGAGAGGCGACAATACCAA 779
Query 738 GAATCAATCGTGGATGATACTTCACCTTCAACTGTTTATGGCGCCGAGCATTTGCTCCGT 797
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAATCAATCGTGGATGATACTTCACCTTCAACTGTTTATGGCGCCGAGCATTTGCTCCGT 839
Query 798 CTCTTTGTGAAGTTACCGGAGCTTCTTTCATATGTAAACATGGAAGAAGAAACATGGAGT 857
|||||||| ||||| || || ||| |||||||||||||||||||||||||||||||||||
Sbjct 840 CTCTTTGTCAAGTTGCCAGATCTTTTTTCATATGTAAACATGGAAGAAGAAACATGGAGT 899
Query 858 CGCATGCAGCAAACATTATCAGACTTCCTCAAGTTTATTCAGAAGAATCAGAACACTTTC 917
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 900 CGCATGCAACAAACATTATCAGACTTCCTCAAGTTTATTCAGAAGAATCAGAGCACTTTC 959
Query 918 TTGCTACCATCAGCATATGATTCTGATAAGGTTTCAGATGGTAAAGGCAAAGGAAAAGAC 977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTGCTACCATCAGCATATGATTCTGATAAGGTTTCAGATGGTAAAGGCAAAGGAAAAGAC 1019
Query 978 GATTGACA 985
|| |||||
Sbjct 1020 GACTGACA 1027
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49128995766
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5