BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944135

Length=1670
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G40020.1 | Symbols:  | Myosin heavy chain-related protein | ...   215    1e-54
  AT4G39756.1 | Symbols:  | Galactose oxidase/kelch repeat superf...  65.8    1e-09


> AT4G40020.1 | Symbols:  | Myosin heavy chain-related protein 
| chr4:18553453-18555300 REVERSE LENGTH=1848
Length=1848

 Score =  215 bits (116),  Expect = 1e-54
 Identities = 183/213 (86%), Gaps = 13/213 (6%)
 Strand=Plus/Plus

Query  1396  AGGATTGAAGCAGAAGAATCACTTTCT-GCTTGGAATGGG-AAGAATCTGTGTTCAGTGA  1453
             |||||||||||||| ||||| |||| | |||||||||||| |||||||||||||  ||||
Sbjct  715   AGGATTGAAGCAGAGGAATCGCTTT-TGGCTTGGAATGGGAAAGAATCTGTGTT-TGTGA  772

Query  1454  GTTGTATAAAAAGAGTTGGAGAAAG-TGAGAAGAATTCACTTGTTGATGAGAACAATAGA  1512
              ||||||  ||||||  |||| ||| |||||||||||||||| |||||||||||||||| 
Sbjct  773   CTTGTAT--AAAGAG-AGGAG-AAGATGAGAAGAATTCACTTCTTGATGAGAACAATAGG  828

Query  1513  TTGCTTGAAGCTTTTGTCGCTGATGAGAATCTGAGCAAGAAGGCTAAAGAAGAGAATCAT  1572
             |||||||| ||| |||| |||| ||||||| |||||||||||||||||||||||||||||
Sbjct  829   TTGCTTGAGGCTCTTGTTGCTGCTGAGAATTTGAGCAAGAAGGCTAAAGAAGAGAATCAT  888

Query  1573  AATAAGGTTAGAAATATA-TCAAACATGAGATT  1604
             ||   ||||||  ||||| | ||||| | ||||
Sbjct  889   AA---GGTTAGGGATATACTAAAACAAGCGATT  918


> AT4G39756.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr4:18441756-18443000 FORWARD LENGTH=1195
Length=1195

 Score = 65.8 bits (35),  Expect = 1e-09
 Identities = 41/44 (93%), Gaps = 0/44 (0%)
 Strand=Plus/Plus

Query  595  TGGGCAGAGGTATTCGACCCAAAGACTCAAACTTGGGAATCTTT  638
            ||||| |||||||||||||||||||||||||||||| || ||||
Sbjct  586  TGGGCTGAGGTATTCGACCCAAAGACTCAAACTTGGAAACCTTT  629



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 82529695980


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5