BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944138
Length=340
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36880.1 | Symbols: CP1 | cysteine proteinase1 | chr4:173744... 355 1e-97
> AT4G36880.1 | Symbols: CP1 | cysteine proteinase1 | chr4:17374458-17376225
REVERSE LENGTH=1410
Length=1410
Score = 355 bits (192), Expect = 1e-97
Identities = 233/252 (92%), Gaps = 6/252 (2%)
Strand=Plus/Plus
Query 90 TACGAATCTTGATCACGCGGTGGTTGCGGTCGGGTACGGGTCAGAGAACGGTGTTGACTA 149
||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 945 TACAAATCTTGATCACGCGGTGGTTGCTGTCGGGTACGGATCAGAGAACGGTGTTGACTA 1004
Query 150 TTGGATTATAAGGAACTCTTGGGGTCCACGTTGGGGTGAGGAAGGTTACATTAGGATGGA 209
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1005 CTGGATTGTAAGGAACTCTTGGGGTCCACGTTGGGGTGAGGAAGGTTACATTAGAATGGA 1064
Query 210 GAGAAACTTGGCAGC-TGCCAAATCCGGTATGTGTGGGATTGCGGTTGAAGCCCCGTACC 268
||||||||||||||| | |||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1065 GAGAAACTTGGCAGCCT-CCAAATCCGGTAAGTGTGGGATTGCGGTTGAAGCCTCGTACC 1123
Query 269 CGGTTAAGCACAGCCCAAACCCGGTTCGTGGAAGTA-T--CAACAGTGTTTGATAATGAT 325
|||||||| |||||||||||||||||||||||| || | || |||||||||| ||| |
Sbjct 1124 CGGTTAAGTACAGCCCAAACCCGGTTCGTGGAAATACTATCAGCAGTGTTTGA-AATCAA 1182
Query 326 GACGCTCGATAA 337
||||||||||||
Sbjct 1183 GACGCTCGATAA 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15884608684
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5