BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944140
Length=1607
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36890.1 | Symbols: IRX14 | Nucleotide-diphospho-sugar trans... 2569 0.0
> AT4G36890.1 | Symbols: IRX14 | Nucleotide-diphospho-sugar transferases
superfamily protein | chr4:17379175-17381780 REVERSE
LENGTH=2187
Length=2187
Score = 2569 bits (1391), Expect = 0.0
Identities = 1544/1617 (95%), Gaps = 13/1617 (1%)
Strand=Plus/Plus
Query 4 AGAGGTCAACGAAGAAGATGAAGCTCTCTGCTTTACATCAGAGTTACTTGAATCGTCGGA 63
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 137 AGAGGTCAACGAAGAAGATGAAGCTCTCTGCTTTACATCAGAGTTACTTAAATCGCCGGA 196
Query 64 GTAATAGCTTCAGATCTCCGACGTCTCTTGATTCTTCCGTTGATGGCTCCGGGAAGTCTT 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 GTAATAGCTTCAGATCTCCGACGTCTCTTGATTCTTCCGTTGATGGCTCCGGGAAGTCTT 256
Query 124 TAATCGCTGTGTTTTGGCTTATCCTGCACTGTCTTTGTTGCTTGATTAGTCTAGTCCTCG 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 257 TAATCGCTGTGTTTTGGCTTATCCTGCACTGTCTTTGTTGCTTGATTAGTCTAGTTCTCG 316
Query 184 GCTTTCGATTCTCCAGATTAGtcttcttcttcctcttctctacttcttcAACGAATCTCT 243
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 317 GCTTTCGATTCTCCAGATTAGTCTTCTTCTTCCTCTTCTCTACTTCTTCAACCAATCTCT 376
Query 244 ACTCTGTTCCGTTTCGTCCTGACTTACCGGTGAAGCACCTCGATGTTCACACAATCGGCC 303
||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 377 ACTCTCTTCCGTTTCGTCCTGACTTACCTGTGAAACACCTCGATGTTCACACAATCGGCC 436
Query 304 GTAATCTGGATCCCGGAGCAAACGG---GAC---GGTGGCGATGGCGACGAAGAGCTCTC 357
||| ||| ||||||||||| ||||| ||| |||||||| ||||||||| |||||||
Sbjct 437 GTACTCTCGATCCCGGAGCTAACGGAACGACGGTGGTGGCGACGGCGACGAAAAGCTCTC 496
Query 358 GTGTTGTCGTTGGAAGACACGGGATCCGGATCCGGCCTTGGCCGCATCCGAATCCCGTCG 417
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 497 GTGTTGTTGTTGGAAGACACGGGATCCGGATCCGTCCTTGGCCGCATCCGAATCCCGTTG 556
Query 418 AGGTAATGAAAGCTCATGGGATCATTGAGAGAGTTCAGAAGGAGCAAAAGACCATCTTTG 477
||||||||||||||||| |||||||| ||||||||| || |||||||||| |||||||
Sbjct 557 AGGTAATGAAAGCTCATCAGATCATTGGGAGAGTTCAAAAAGAGCAAAAGATGATCTTTG 616
Query 478 GGATGAAAAGTAGTAAGATGGTTATAGCTGTGACACCGACTTATGTGAGGACTTTTCAAG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 GGATGAAAAGTAGTAAGATGGTTATAGCTGTGACACCGACTTATGTGAGGACTTTTCAAG 676
Query 538 CTTTGCATTTGACTGGTGTGGTGCATTCGTTGATGCTTGTTCCTTATGATGTGGTTTGGA 597
|||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||
Sbjct 677 CTTTGCATTTGACTGGTGTGATGCATTCTTTGATGCTTGTTCCTTATGATCTGGTTTGGA 736
Query 598 TCGTTGTTGAAGCTGGTGGTGCTACTAATGAGACGGGTTTGATTATTGCTAAATCAGGGC 657
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 737 TCGTTGTTGAAGCTGGTGGTGCTACTAATGAGACCGGTTTGATTATTGCAAAATCAGGAC 796
Query 658 TTAGGACGATTCATGTTGGGATTGATCAAAGAATGCCTAATACTTGGGAGGATCGTAGTA 717
||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 797 TTAGGACCATTCATGTTGGGATTGATCAGAGAATGCCTAATACTTGGGAAGATCGTAGTA 856
Query 718 AATTAGAAGTCTTTATGAGACTTCAAGCTTTGAGAGTTGTGAGGGAAGAGAAGCTTGATG 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 AATTAGAAGTCTTTATGAGACTTCAAGCTTTGAGAGTTGTGAGGGAAGAGAAGCTTGATG 916
Query 778 GGATTGTGATGTTTGCGGATGATAGTAATATGCATAGTATGGAGTTCTTTGACGAAATTC 837
|||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 917 GGATTGTGATGTTTGCGGATGATAGTAATATGCATAGTATGGAGTTGTTTGATGAGATTC 976
Query 838 AGAATGTGAAGTGGTTTGGTACTGTTTCTGTTGGGATATTGGCGCATTCGGGGAATGCgg 897
||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 977 AGAATGTGAAGTGGTTTGGTACTGTTTCTGTTGGGATATTGGCTCATTCAGGAAATGCGG 1036
Query 898 aagagatggttatgtcgatggataagaggaaagagatggagaaagaggaagaggaggaga 957
||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1037 AAGAGATGGTTTTGTCGATGGAAAAGAGGAAAGAGATGGAGAAAGAGGAAGAAGAGGAGA 1096
Query 958 gCTCTTTGTTACCGGTACAAGGTCCTGCTTGTAACTCAACTGATCAGTTGATTGGTTGGC 1017
|||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 GCTCTTCGTTACCTGTACAGGGTCCTGCTTGTAACTCAACTGATCAGTTGATTGGTTGGC 1156
Query 1018 ATATTTTCAATACATTGCCGTATGCGGGGAAGAGTGCGGTTTATATAGATGATGTTGCTG 1077
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1157 ATATTTTCAATACATTGCCATATGCGGGGAAGAGTGCAGTTTATATAGATGATGTTGCTG 1216
Query 1078 CGGTTTTGCCTCAAAAACTAGAGTGGTCTGGGTTTGTGTTGAACTCGAGATTGCTTTGGG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 CGGTTTTGCCTCAAAAACTAGAGTGGTCTGGGTTTGTGTTGAACTCGAGATTGCTTTGGG 1276
Query 1138 AGGAAGCTGAGAATAAGCCAGAGTGGGTTAAGGACTTTGGGTCGTTGAATGAGAATGAAG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 AGGAAGCTGAGAATAAGCCAGAGTGGGTTAAGGACTTTGGGTCGTTGAATGAGAATGAAG 1336
Query 1198 GTGTGGAGAGTCCTTTGTCTCTATTGAAGGATCCTTCAATGGTGGAACCTCTTGGAAGCT 1257
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1337 GTGTGGAGAGTCCTTTGTCTCTGTTGAAGGATCCTTCAATGGTGGAGCCTCTTGGAAGCT 1396
Query 1258 GTGGAAGACAGGTTCTGCTATGGTGGCTTCGAGTTGAAGCACGAGCTGATAGCAAATTCC 1317
|||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1397 GTGGAAGACAAGTTCTGCTATGGTGGCTTCGAGTAGAAGCACGCGCTGATAGCAAATTCC 1456
Query 1318 CTCCCGGATGGATAATTGATCCTCCGTTAGAGATTACAGCCGCGGCTAAACGCACTCCAT 1377
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1457 CTCCCGGATGGATAATTGATCCTCCGTTAGAGATCACAGTTGCGGCTAAACGCACTCCAT 1516
Query 1378 GGCCAGATGTTCCTCCTGAGCCACCAACCAAAAAGAAAGATCAAATGCCATTATCCCAAG 1437
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1517 GGCCAGATGTTCCTCCTGAGCCACCAACTAAAAAGAAAGATCAAATGCCATTATCCCAAG 1576
Query 1438 GCAACACCGTCGTGGTAATACCGAAGCAGCAACAACATGCAACCAAAATCCGAAAACCGA 1497
|||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||
Sbjct 1577 GCAACACCGTCGTGGTAATACCAAAGCAGCAACAACATCCAACGAAAATCCGAAAACCGA 1636
Query 1498 AACGCAGAAGTAAGAAAAATAAACACGAACCTAGACCAACGGATACA-CAA-----GTTT 1551
|||||| ||||||||||| ||||||||||||||||||||| |||||| ||| ||||
Sbjct 1637 AACGCAAAAGTAAGAAAAGTAAACACGAACCTAGACCAACCGATACAACAACACAAGTTT 1696
Query 1552 ATTCATCTTCGTCTAAGCATCaagaaagaaactgagaaaagaagaaaaaa-CTTTTG 1607
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1697 ATTCATCTTCGTCTAAGCATCAAGAAAGAAACTGAGAAAAGAAGAAAAAAGCTTTTG 1753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79367061645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5