BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944149
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36970.1 | Symbols: | Remorin family protein | chr4:1742974... 2023 0.0
> AT4G36970.1 | Symbols: | Remorin family protein | chr4:17429744-17431685
REVERSE LENGTH=1592
Length=1592
Score = 2023 bits (1095), Expect = 0.0
Identities = 1270/1349 (94%), Gaps = 33/1349 (2%)
Strand=Plus/Plus
Query 6 GTTCTTTGAGAAA--AACATGAGAAAGACTTCTGTTTCATCGAATAGCTTTGGTGGGTTT 63
||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 209 GTTCTTTGAGAAACCAACATGAGAAAGACTTCTGTTTCATCTAATAGCTTTGGTGGGTTT 268
Query 64 TTAAGTCCCGGAGCTCCGAGTTACGCCGATAACAAAGGTTGGAGCTCCGAGAGAGTTCCT 123
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 269 TTAAGTCCCGGAGCTCCGAGTTACGCTGACAACAAAGGTTGGAGCTCCGAGAGAGTTCCT 328
Query 124 CATCCTTCGTCGACCACTTCCAGCTCAGCAATTAACGGTGGTCGTCGTCACATCGGCTCT 183
|||||||| || || |||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 329 CATCCTTCCTCCACTACTTCCTCCTCTGCAATTAACGGTGGTCGTCGTCACATCGGCTCT 388
Query 184 GCTTCTGCTTTAACGACGCCGTTTTACAGCGGCAGAGCTATACCTTCGAAATGGGAAGAT 243
|||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 389 TCTTCCGCTTTAACGACGCCGTTTTACAGCGGCAGAGCAATTCCTTCGAAATGGGAAGAT 448
Query 244 GCTGAACGGTGGATTTGTAGTCCTGTGTCGACATACCCACAAGGTGTTTGTAAAAATTCC 303
||||| |||||||||||||| ||||||||||| |||||||||||||||||| |||||||
Sbjct 449 GCTGAGCGGTGGATTTGTAGCCCTGTGTCGACTTACCCACAAGGTGTTTGTTTAAATTCC 508
Query 304 TCAGTGAGTTCTCAGTTTTCTGAACAGAGACGTCAGAAATCTAAAAGTGGTCCGATTGTT 363
||||| | || ||||||||||||| | |||||||||||||||||||||||||||
Sbjct 509 TCAGT--G-----AG--TTCTGAACAGAGAAGGCAGAAATCTAAAAGTGGTCCGATTGTT 559
Query 364 CCTCCTACGTTGCCTCATCCGCATCCGACGTCTTCTTCTTCGGCGGTTGGGTGTTATCAC 423
|||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 560 CCTCCTACGTTGCCTCATCCGCATCCTACGTCTTCTTCGTCGGCGACTGGGTGTTATCAC 619
Query 424 TATTCTCCGAGGATGATGATTCGGTCCATGGAAGCTCCTCCCAAGGGTTTAATGGTCGCT 483
|||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||| |||
Sbjct 620 TATTCTCCGAGGATGATGATGCGGTCTATGGATGCTCCTCCTAAGGGTTTAATGGTTGCT 679
Query 484 GGTTCTCCGTTTTCTACTGGAGTTTTGGAGGCGGATAGGGTTTTCAGAGGAAGTGTCGGT 543
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 680 GGTTCTCCGTTTTCTACTGGAGTTTTGGAGGCGGATAGGGTTTTTAGAGGAAGTGTC--- 736
Query 544 GGTGCTGGTGGTGCTGGTGGATGTGATGGCTATGGTCATGGACCTGGTCATGGACATAGC 603
| | |||| | | |||| |||||||||||||||| ||||||||| ||||||||||||
Sbjct 737 -G-G-TGGT-G-G-TGGT---TGTGATGGCTATGGTCGTGGACCTGGCCATGGACATAGC 787
Query 604 CGGAGCTGGGTTGATTTGATGAGTGAAGAAACTTCATCACTTAGCTCCAAAACTGATACA 663
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 788 CGGAGCTGGGTTGATTTGATGAGTGAAGAAACTTCTTCACTTAGCTCCAAAACTGATAC- 846
Query 664 GAGGAGGAGAAAGCAGAGATGACGACGGCGATGCAATCTCCGGTGGTGTCAAGAAGAGAT 723
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 847 -A-GAGGAGAAAGCAGAGATGACGACGGCGATGCAATCTCCGGTGGTATCAAGAAGAGAT 904
Query 724 ATGGCTACTCAGATGAGTCCAGAAGAGATGAGTCCTAATAAC---AACCAGTCTCCACCA 780
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 905 ATGGCTACTCAGATGAGTCCAGAAGAGACGAGTCCTAATAACAATAACCAGTCTCCACCA 964
Query 781 TTGGTTGTTTCTGTGATTGAGCCTCCTCCTTGTAGAGGTGAAGTGAGAGAAGTGAAAATG 840
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 965 TTGGTTGTTTCTGTGATTGAGCCACCTCCTTGTAGAGGTGAAGTGAGAGAAGTGAAAATG 1024
Query 841 GATAAAGGAGCAAGAATGATTAAGCGTCCAAAGAGACGAGTTATGTCTTCTAGGATTATT 900
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1025 GATAAAGGAGCAAGAATGATTAAGCGTCCAAAGAGACGAGTCATGTCTTCTAGGATTATT 1084
Query 901 AGGAGAGAGCAACCTGAGGTTGAAGACAATTCTGAAGCTTCTGCTTCTTCTTCTTCTTGG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1085 AGGAGAGAGCAACCTGAGGTTGAAGACAATTCTGAAGCTTCTGCTTCTTCTTCTTCTTGG 1144
Query 961 GATATCTCGGAACCAGCCATGACTCTTTCTAAGTTGCAAAGAGAGGAAGCGAAGATAGCA 1020
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1145 GATATCTCAGAACCAGCCATGACTCTTTCTAAGTTGCAAAGAGAGGAAGCGAAGATTGCA 1204
Query 1021 GCTTGGGAAAATCTGCAGAAGGCGAAAGCAGAAGCCGCCATCAGAAAACTCGAGGTGAAG 1080
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 1205 GCTTGGGAAAATCTGCAGAAGGCGAAAGCAGAAGCCGCTATTAGAAAACTTGAGGTGAAG 1264
Query 1081 CTGGAGAAGAAGAAATCAGCATCAATGGATAAGATTTTGAACAAGCTTCAAACAGCTAAG 1140
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1265 CTGGAGAAGAAGAAATCAGCATCAATGGATAAGATCTTGAACAAGCTTCAAACAGCTAAG 1324
Query 1141 ATCAAAGCACAAGAGATGAGGAGAAGTTCAGTATCCAGTGAACATG---AACAACAAGGG 1197
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1325 ATCAAAGCACAAGAGATGAGGAGAAGTTCAGTATCCAGTGAACATGAACAACAACAAGGG 1384
Query 1198 AATCATCAAATCTCCAGAAACTCAGTGAAGATCACTCATCTTGTCCGAAGACATACTTTC 1257
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 1385 AATCATCAAATCTCCAGAAACTCGGTGAAGATCACGCATCTTGTTCGAAGACATACTTTC 1444
Query 1258 ATGACTCCTTTCATGACTTGCTTTGCTCCTCGTGTTGATTGCAGAAAATCTTCTTCTGCT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1445 ATGACTCCTTTCATGACTTGCTTTGCTCCTCGTGTTGATTGCAGAAAATCTTCTTCTGCT 1504
Query 1318 CTCTGAATTTTTT-ATTGAAAAGACAATT 1345
||||||||||||| |||||||||||||||
Sbjct 1505 CTCTGAATTTTTTTATTGAAAAGACAATT 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66214518855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5