BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944155
Length=679
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37020.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1013 0.0
> AT4G37020.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: eukaryotic initiation factor 4A-III (TAIR:AT3G19760.1).
| chr4:17445710-17447369 FORWARD LENGTH=1036
Length=1036
Score = 1013 bits (548), Expect = 0.0
Identities = 612/643 (95%), Gaps = 3/643 (0%)
Strand=Plus/Plus
Query 1 CAA-TTTGAGAAACTCGGACTATGGACTCCATGGAAGCTCCATCTCCT-CCTTTTCAATC 58
||| ||||||||| |||| ||||||||||||||||||||||||| || || ||||||||
Sbjct 48 CAATTTTGAGAAAGACGGATTATGGACTCCATGGAAGCTCCATCT-CTACCATTTCAATC 106
Query 59 TCCCTCTCGTTCCAGTCAACAATTGCATTTCTACCTCGCCGTGGATCGTCCCCAATTCAA 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 TCCCTCTCGTTCCAGTCAACAATTGCATTTCTACCTCGCCGTGGATCGTCCCCAATTCAA 166
Query 119 AATGGAGACTGTAGTGGAATTATTGGGCGTTCTAGGTCGTCGTCCATGGCTTCCGATTGT 178
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 167 AATGGAGACTGTAGTGGAATTATTAGGCGTTCTAGGTCGTCGTCCATGGCTTCCGATTGT 226
Query 179 AGTCTGTTGCAGCTCTCGTGATGAACTCGACGCCGTCTGTTCTTCCTTATCCACTCTTCC 238
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 227 AGTCTGTTGCAGCTCTCGTGACGAACTTGACGCCGTCTGTTCTTCCTTATCCACTCTTCC 286
Query 239 TTACATTTCATTAGCCGCTTTGTACAGCGATCTAGCAGATAGAGAACGAACTATGGTTAT 298
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 287 TTACATTTCCTTAGCCGCTTTGTACAGCGATCTAGCAGATAGAGAACGAGCTATGGTTAT 346
Query 299 AGAGAAATTCAAGCAAGCAACAATCAACTGGAACCAGCAACTTAACTCTGTGGTAGAGGA 358
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 347 AGAGAAATTCAGGCAAGCAACAATCAACTGGAACCAGCAACTTAACTCTGTGGTAGAAGA 406
Query 359 AGTTTTGGAAGAGAGTGAAACCAGAAAAGAAGAAAATAAATCTCATTTGGTAGTTGTGAC 418
|| ||||||||||||||||| | ||||||||||||| | |||||||||||||||||||||
Sbjct 407 AGGTTTGGAAGAGAGTGAAAACGGAAAAGAAGAAAAGACATCTCATTTGGTAGTTGTGAC 466
Query 419 CGATGTTTGTCTTCCGTTACTCTCATCCGGAGAATCTTCTCTCTCCGCCCGCGTTCTCAT 478
||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 467 CGATGTTTGCCTTCCGTTACTCTCATCAGGAGAATCTTCTCTATCCGCACGCGTTCTCAT 526
Query 479 CAACTATGAGCTTCCTACAAAGAAGGAAACATATACAAGGCGTATAACAACTTGCTTAGC 538
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 AAACTACGAGCTTCCTACAAAGAAGGAAACATATACAAGGCGTATAACAACTTGCTTAGC 586
Query 539 TTCAGGTGGAATTGTCATAAACATGGTTGTTGGAGGTGAAGTCGCGACTCTCAAAAGCCT 598
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 587 TTCAGGTGGAATAGTCATAAACATGGTTGTTGGAGGTGAAGTAACGACTCTCAAAAGCCT 646
Query 599 CGAAGAAAGCAGCGGCATAATCATCGCAGAGATGCCAATCAAT 641
|||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 647 CGAAGAAAGCAGTGGCATACTCATCGCTGAGATGCCAATCAAT 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32853132138
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5