BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944156
Length=1750
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2676 0.0
> AT4G37030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G12680.1); Has
101 Blast hits to 99 proteins in 12 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:17451928-17454760
FORWARD LENGTH=2063
Length=2063
Score = 2676 bits (1449), Expect = 0.0
Identities = 1649/1745 (94%), Gaps = 16/1745 (1%)
Strand=Plus/Plus
Query 1 GCTTTCCTTTCCAGAAGACTATGGCTGTCGTCGTAACTAACCTAGGAAGCTGTCTGAAGA 60
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 203 GCTTTCCTTTCCGGAAGACTATGGCTGTCGTCGTCACTAACCTAGGAAGCTGTCTGAAGA 262
Query 61 TTACTTATGTCATATTTGCCTTTTGTTCTGCTTTCTTTCTCGGTGCTCTCAAAGGTTTGA 120
|| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 263 TTTCTTATGTCATCTTTGCCTTTTGTTCTGCTTTCTTTCTCGGTGCTATCAAAGGTTTGA 322
Query 121 TCGTAGGTCCAATTGCTGG-TCTAACATTAATAGCAGGAAATGTTGGAGTGATTCTTGGT 179
||||||||||||||||||| | |||||||||||| || |||||||||||||||||| ||
Sbjct 323 TCGTAGGTCCAATTGCTGGAT-TAACATTAATAGTTGGGAATGTTGGAGTGATTCTTTGT 381
Query 180 TTGTTCCCTGCACATGTTACTTGGACTATTTACGCTGTTGCAACA-ACAAATAGATTTGA 238
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 382 TTGTTCCCTGCACATGTTACTTGGACTATTTACGCTGTTGCAA-AGACAAATAGATTTGA 440
Query 239 CATTCCTCTGAAACTAGCAATCTTAGTGGCACTTCCCGCTTTATTTGGGATATGGTTAGG 298
|||||||||||| |||||||||||||||||||||| || || |||||||||||||||||
Sbjct 441 CATTCCTCTGAAGGTAGCAATCTTAGTGGCACTTCCTGCATTGTTTGGGATATGGTTAGG 500
Query 299 TCTAAGTCTAGCAATTAGTGTTCTTGTTGGTGTTGGCTATGGATTCTTCACTCCTTGGAT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 TCTAAGTCTAGCAATTAGTGTTCTTGTTGGTGTTGGCTATGGATTCTTCACTCCTTGGAT 560
Query 359 CTCTGCTTTTGAAGCATTTAGACAAGACACTGAATCCAACAAGTTCTTCCACTGTCTTGT 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 CTCTGCTTTTGAAGCCTTTAGACAAGACACTGAATCCAACAAGTTCTTCCACTGTCTTGT 620
Query 419 GGATGGAACTTGGGGAACCATCAAAGGAAGTTGTACTGTGGTTACCGATTTCGCAGATTT 478
||||||||||||||||||||||||||| ||||| | ||||||||| ||||| ||||||||
Sbjct 621 GGATGGAACTTGGGGAACCATCAAAGGGAGTTGCATTGTGGTTACTGATTTTGCAGATTT 680
Query 479 TTGTTACCATTCGTATCCACTTTACTTAAAGGAGTTGCGCGAATCCCCGGCCCCAGATGA 538
|||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 681 TTGTTACCATTCTTATCCACTTTACTTAAAGGAGTTACGCGAATCCCCGGTTTCAGATGA 740
Query 539 GCTTGAAACTCTTAGGTTAATTCATGTTCCAGGATGCATCATTGTTGGGATTATAGGATT 598
|||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 741 GCTTCAAACTCTTAGGTTGATTCATGTTCCAGGATGCATCATTGTTGGGATTCTAGGATT 800
Query 599 AGTCATTGATATCCCTCTTTTCACTGCAATCGCGG-TATTTAAAAGCCCTTACCTTCTGC 657
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 801 AGTCATTGATATCCCTCTTTTCACTGCAATCGCGGTTA-TTAAAAGCCCTTACCTTCTTC 859
Query 658 TCAAAGGCTGGTACCGACTAGCTCAAGACGCTATTAACCGGGAAGGACCATTCCTTGAAA 717
||||||||||||||||||||||||||||||| ||||| || ||||||||||| |||||||
Sbjct 860 TCAAAGGCTGGTACCGACTAGCTCAAGACGCGATTAATCGAGAAGGACCATTTCTTGAAA 919
Query 718 TAGCTTGTATACCAGTTGCTGGTTTGACAATACTGTTATGGCCTATTA-TTGTCATTGGT 776
||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||
Sbjct 920 TAGCTTGTATACCAGTTGCTGGTTTGACAGTACTGTTATGGCCTA-TAGTTGTCATTGGT 978
Query 777 TTTGTTTTGATGACCATCTTCTCCAGCATCTTTGTTGGATTATATGGAGCAGTTGTTGTA 836
||| ||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 979 TTTATTTTGGTGACCATCTTCTCCAGCATCTTTGTAGGACTATATGGAGCAGTTGTTGTA 1038
Query 837 TTTCAGGAAAGGTCATTCAGAAGAGGAGTCTCTTATGTGATTGCAGTAGTTGGAGAATTT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 TTTCAGGAAAGGTCATTCAGAAGAGGAGTCTCTTATGTGATTGCAGTAGTTGGAGAATTT 1098
Query 897 GATGAGTACACAAATGATTGGCTTTACCTTAGAGAAGGAACTATCTTCCCAAAACCAAGA 956
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1099 GATGAGTACACAAATGATTGGCTTTACCTTAGAGAAGGAACCATCTTCCCAAAGCCAAGA 1158
Query 957 TATCGGATGAGAAGAGGATCGTTTTCAAGTGAAGTATCGGTGATTGTTCACCCTTCAGAT 1016
||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 1159 TATCGGATGGGAAGAGGATCGTTTTCAAGTGAAGTATCTGTGATCGTTCACCCTTCAGAT 1218
Query 1017 GTAAGC-AGAGTCAATAGTTCCGGTTCTG-CAGATGCTCCAGCGATGCTAGTACCTAGCC 1074
|||| | |||||||||||||| ||||||| | ||||||||||||||||||||||| ||||
Sbjct 1219 GTAA-CAAGAGTCAATAGTTCTGGTTCTGTC-GATGCTCCAGCGATGCTAGTACCGAGCC 1276
Query 1075 TAGTTCACTCTGTATCTGTTAGAGAAGCAATACAAGAAGTGAGAATGGTTCAGATTTGGG 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 TAGTTCACTCTGTATCTGTTAGAGAAGCAATACAAGAAGTGAGAATGGTTCAGATTTGGG 1336
Query 1135 AGCATATGATGGGGTGGTTTGAGATGCAAGGCAGAGAGCTACTTGACGCAGGAGTCTTAA 1194
||||||||||||||||||||||||||||||||| ||||||||| || |||| ||| ||||
Sbjct 1337 AGCATATGATGGGGTGGTTTGAGATGCAAGGCAAAGAGCTACTAGATGCAGAAGTGTTAA 1396
Query 1195 CACCAGCTGATCTCTATGAGTCTTTAAAGGGAAGACACGGAAACGAATCATCGATTATCA 1254
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1397 CACCAACTGATCTCTATGAGTCTTTAAAGGGCAGACACGGAAACGAATCATCGATTATCA 1456
Query 1255 ATGTCGGGCTTCCTTCTTACGCTTTGTTGCATACATTGCTTAGCTCTATTAAAGCTGGTA 1314
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1457 ATGTCGGGCTTCCTTCTTACGCTTTGTTGCATACATTGCTTAGCTCTATAAAAGCTGGTG 1516
Query 1315 CTCATGGTGTGCTTCTGCTTGATGGCTCGGAGGTGAC-CAATTTGAATAGACCGCAGGAC 1373
||||||||||||| |||||||||||||||| ||||| || |||||||||||| || |||
Sbjct 1517 TTCATGGTGTGCTTTTGCTTGATGGCTCGGAAGTGACACA-TTTGAATAGACCACAAGAC 1575
Query 1374 AAGTTCTTGGACTGGTTCTTTAACCCAATTATGGTACTGAAAGATCAGATTCGAGCGATT 1433
||||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||| ||
Sbjct 1576 AAGTTCTTGGACTGGGTCTTTAATCCAATAATGGTATTGAAAGATCAGATTCGAGCTCTT 1635
Query 1434 AAACTTGGAGAAAGTGAGGTTAGATACTTAGGGAAAGTTGTTCTCTTTGGAAACCATGAA 1493
||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1636 AAACTTGGAGAAAGTGAAGTTAAATACTTAGAGAAAGTTGTTCTCTTTGGAAACCATGAA 1695
Query 1494 CAAAGGATGGAAGCTTGGGATAATCTCGGTAACCCGCCTCAAGAAAACCTTCGAGCTGCT 1553
||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||
Sbjct 1696 CAAAGGATGGAAGCTTGGGATAATCACAGTAACCCGCCTCAAGAAAACCTTCGAACTGCT 1755
Query 1554 CAAATCCAAGGAATCAGCAGAAGGATGATGGGAATGGTGCGGAGTGTATCGAAGCTTCCC 1613
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1756 CAAATCCAAGGAATCAGCAGAAGGATGATGGGAATGGTACGGAGCGTATCGAAGCTTCCG 1815
Query 1614 ACTTATAGAAGAAGGTTCAGACAAGTGGTTAAGGCTCTAATAACTTATCATTTAGAGAAA 1673
||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||
Sbjct 1816 ACTTATAGAAGAAGGTTCAGACAAGTGGTTAAGGCTCTAATTACTTATTATTCAGAGAAA 1875
Query 1674 CAAGGCTTGAATCGAACCGGTTCCATGAGTTCTGGAGATTTCATTGAAGAGG-TCTAACC 1732
|||||||| |||||||||||||||||||| |||||||||||||||||||||| | |||||
Sbjct 1876 CAAGGCTTAAATCGAACCGGTTCCATGAGCTCTGGAGATTTCATTGAAGAGGGT-TAACC 1934
Query 1733 AAGGA 1737
||||
Sbjct 1935 TAGGA 1939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86545739580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5