BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944158
Length=1093
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37040.1 | Symbols: MAP1D | methionine aminopeptidase 1D | c... 1762 0.0
> AT4G37040.1 | Symbols: MAP1D | methionine aminopeptidase 1D |
chr4:17455139-17457357 FORWARD LENGTH=1361
Length=1361
Score = 1762 bits (954), Expect = 0.0
Identities = 1050/1097 (96%), Gaps = 4/1097 (0%)
Strand=Plus/Plus
Query 1 AGCTCGCCGAGAAAGCACAAATGGCGGGCGTGAAATCTCTGCAACCCAGACTCATCTCTT 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 17 AGCTCGCCGAGAAAGCACAAATGGCGGGCGTGAAATCTCTGCAACCTAGACTCATATCTT 76
Query 61 CCTTTCTCGGCAACAATTCTATTCGATCAACGCAACCACTTATTCATCTCTTTCGCTTCG 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 77 CCTTTCTCGGCAACAATTCTATTAGATCAACGCAACCACTTATTCATCTCTTTCGCTTCG 136
Query 121 ATTTAGGAAGAAGACATGTTTCGATGCAATTATCAAGAACCTTTTCCGGATTAACCAATC 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 137 ATTTAGGAAGAAGACATGTTTCGATGCAATTATCAAGAACCTTTTCTGGATTAACCGATC 196
Query 181 TCCTGTTTAATAGAAGAAATGAAGATGAAGTTATTGATGGCAAGAGAAAACGTCTGAGAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 TCCTGTTTAATAGAAGAAATGAAGATGAAGTTATTGATGGCAAGAGAAAACGTCTGAGAC 256
Query 241 CTGGAAATGTATCTCCTCGTCGTCCTGTCCCGGACCATATAACAAAACCTCCTTATGTTG 300
| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 257 CGGGAAATGTATCTCCTCGTCGTCCTGTTCCGGGTCATATAACAAAACCTCCTTATGTTG 316
Query 301 ATTCTTTTAAAGCTCCCGGAATCTCAAGTGGACTTGAAATTCATGATAAGAAAGGTATAG 360
||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 317 ATTCTCTTCAAGCTCCCGGAATCTCAAGTGGACTTGAAGTTCATGATAAGAAAGGTATAG 376
Query 361 AATGCATGAGAGCTTCCGGAAAACTTGCAGCTAGGGTTCGGGAATACGCTGGGACTTTGG 420
|||||||||||||||| |||| |||||||||||||||||| || |||||||| |||||||
Sbjct 377 AATGCATGAGAGCTTCTGGAATACTTGCAGCTAGGGTTCGAGATTACGCTGGCACTTTGG 436
Query 421 TTAAGCCAGGCGTAACCACAGATGAAATCGATGAAGCAGTTCACAATATGATTATTGAGA 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 437 TTAAGCCAGGCGTAACCACTGATGAAATCGATGAAGCAGTTCACAATATGATTATTGAGA 496
Query 481 ATGGAGCGTATCCTTCGCCTCTTGGTTATGGAGGTTTTCCGAAGAGTGTCTGCACATCTG 540
||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 497 ATGGAGCTTATCCTTCGCCTCTTGGTTATGGAGGTTTCCCGAAAAGTGTTTGCACATCTG 556
Query 541 TGAATGAATGCATTTGCCATGGAATACCAGATTCAAGACCACTTGAGGATGGGGATATAA 600
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 557 TGAATGAATGCATTTGCCATGGTATACCAGATTCAAGACCACTTGAGGATGGGGATATTA 616
Query 601 TCAACATCGATGTCACAGTTTATTTGAATGGTTATCATGGTGATACTTCAGCAACTTTCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 617 TCAACATCGATGTCACAGTTTATTTGAATGGTTATCATGGTGATACTTCAGCAACTTTCT 676
Query 661 TCTGTGGAAATGTTGACGAGAAGGCTAAAAAGCTAGTCGAGGTGACAAAAGAGTCTCTCG 720
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 677 TCTGTGGAAATGTTGACGAGAAGGCTAAAAAGCTAGTCGAGGTGACGAAAGAGTCTCTCG 736
Query 721 ACAAAGCTATATCAATATGTGGTCCTGGAGTTGAGTACAAGAAAATCGGCAAAATCATTC 780
||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 737 ACAAAGCAATATCAATATGTGGTCCCGGAGTTGAGTACAAGAAAATCGGCAAAGTCATTC 796
Query 781 ATGATCTTGCAGATAAACATAGATATGGGGTTGTTCGACAATTTGTAGGCCATGGGGTTG 840
||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||
Sbjct 797 ATGATCTTGCAGATAAACATAAATATGGAGTTGTTCGACAATTTGTAGGCCACGGGGTTG 856
Query 841 GCAGCGTCTTCCACGCAGATCCAGTTGTTCTACATTTCCGGAACAATGAAGCTGGACGTA 900
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 857 GCAGCGTCTTCCACGCTGATCCAGTTGTTCTGCATTTCCGGAACAATGAAGCTGGACGTA 916
Query 901 TGGTCTTGAATCAAACCTTCACCATAGAACCAATGCTTACGATAGGAAGCAGAAACCCGG 960
||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 917 TGGTCTTGAATCAAACCTTCACCATTGAACCGATGCTTACAATAGGAAGCAGAAACCCGA 976
Query 961 TAATGTGGGATGATAACTGGACCGTGGTAACGGAAGATGCAAGCCTCTCTGCGCAATTCG 1020
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 977 TAATGTGGGATGATAACTGGACCGTGGTAACAGAAGATGCAAGCCTCTCGGCGCAATTCG 1036
Query 1021 AGCATACGATTCTTATAACCAAAGATGGTGCTGAGATTCTAACCAACTGTTAAAAA--TG 1078
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1037 AGCATACCATTCTTATAACCAAAGATGGTGCTGAGATTCTAACCAAGTGTTAAAAAAATG 1096
Query 1079 AATCTTAAA--TTGATC 1093
| ||| ||| ||||||
Sbjct 1097 ATTCTGAAAAATTGATC 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53563981515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5