BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944165
Length=609
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37090.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 846 0.0
> AT4G37090.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 23
plant structures; EXPRESSED DURING: 13 growth stages; Has
30201 Blast hits to 17322 proteins in 780 species: Archae -
12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr4:17477232-17478729 FORWARD LENGTH=837
Length=837
Score = 846 bits (458), Expect = 0.0
Identities = 558/605 (92%), Gaps = 11/605 (2%)
Strand=Plus/Plus
Query 5 GAAGAT-CATCTGATTCGATGTCGGATAATAAAGACCACGATTCTGATTCCGATGCTCCG 63
|||||| ||| ||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 89 GAAGATAAATCAGATTCGATGTCGGATAATAAAGACCGTGATTCCGATTCCGATGCTCCG 148
Query 64 GAAGAATTCACCCAAGAGCAGGCGAAGCTGGAAGATGAAGCATTGAGGAAAATACAGAGA 123
|| ||||| ||||| |||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 149 GAGGAATTAACCCAGGAGCAGGCGAAGCTGGAAGAGGAAGCACTGTGGAAAATACAGAGA 208
Query 124 GAGAATAAGACTAGGATTACCCGTGAAAAGAAAGAGAGGCGCAAGCTTATGGCAGAGCAA 183
|||||||||| |||| || ||||||| |||||||||||||||||||||||||||||||||
Sbjct 209 GAGAATAAGAATAGGGTTTCCCGTGAGAAGAAAGAGAGGCGCAAGCTTATGGCAGAGCAA 268
Query 184 ATAACGCCCCGGAAAA-CTCGGAAGATTGAAA-AATTCGAGGATGTagaaaaagaagaag 241
|||| | || ||||| |||| |||||||||| |||| |||||||| || |||||
Sbjct 269 GTAACTCTCC-GAAAATCTCGAAAGATTGAAATAATT-GAGGATGT------AGTAGAAG 320
Query 242 aagaagaaCCTGAGGAAAACTCTGAAGCTCTTGCAAAGAAGGGATTCCTTTCCAAAGACA 301
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 321 AAGAAGAACCTGAGGAAAACTCTGAAGCTCTTGCAAACAAGGGATTCCTTTCCAAAGACA 380
Query 302 TCATAGACTTTCTTGCAGAGCGAGAAAAACAAAATGCCGAGTCAGATTCTGAAGAAGATG 361
|||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |
Sbjct 381 TCATAGACTTTCTTGCGGAGCGAGAAAAACAAAAAGCTGAGTCAGATTCTGAAGAAGAAG 440
Query 362 AGATCATAGACGAACTTCCGAGAAAGaaaaagcaaaaaaGCTCAGGGATCGAAACAGTTA 421
|||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 441 AGATCATAGACGAACTCCCAAGAAAGAAAAAGCAAAAAAGCTCAGGGATCGAAACGGTTA 500
Query 422 TTTACAAGGACATTCCACCACCGGAATGCTTGAAAACCGGGTTAGATTTCTTGAAGATGA 481
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 501 TTTACAAGGAGATTCCACCACCAGAATGCTTGAAAACCGGGTTAGATTTCTTGAAGATGA 560
Query 482 GGAGAGCGCAAGTCCCGAGATCGTCTTCAGTCATCAAGAACTCCGGCCAAGCCCTTCGAC 541
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 561 GGAGAGCGCAAGTCCCCAGATCGTCTTCAGTCATCAAGAACTCCGGCCAAGCTCTCCGAC 620
Query 542 TTGCCACCGGTGCTGCTTTAGCCAAGAAGCAACGACAGAGAAAGTGAAACTTAAGATGTA 601
|||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 621 TTGCCACCGGTGCTGCTTTAGCCAAGAAACAGCGACAGAGAAAGTGAAAATTAAGATGTA 680
Query 602 AAATT 606
|||||
Sbjct 681 AAATT 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29336741848
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5