BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944176
Length=1732
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37190.1 | Symbols: | LOCATED IN: cytosol, plasma membrane;... 2822 0.0
> AT4G37190.1 | Symbols: | LOCATED IN: cytosol, plasma membrane;
EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation
binding site (InterPro:IPR013838), Misato Segment
II, myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal
(InterPro:IPR019746); Has 345 Blast hits to 341 proteins
in 161 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi
- 140; Plants - 55; Viruses - 0; Other Eukaryotes - 19 (source:
NCBI BLink). | chr4:17507050-17509747 FORWARD LENGTH=2029
Length=2029
Score = 2822 bits (1528), Expect = 0.0
Identities = 1664/1731 (96%), Gaps = 4/1731 (0%)
Strand=Plus/Plus
Query 4 TCTCCAATTAAAGAACCATGAGAGAAATTGTGACTATTCAAGTTGGAGAATTCGCAAACT 63
|||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 89 TCTCCAATCAAACAACCATGAGAGAAATTGTGACGATTCAAGTTGGAGAATTCGCAAACT 148
Query 64 TCGTCGGCTCCCACTTTTGGAATTTCCAGGATGAATTGCTCGGATTGGCAAGTGACCCAG 123
| || ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 149 TTGTTGGCTCTCACTTTTGGAATTTCCAGGATGAATTGCTCGGATTGGCTAGTGACCCTG 208
Query 124 AAAGCGATCCAATCTTTAGAAACCATAATCTCGACATGGACGTTCTCTACCGCTCCGGTG 183
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 209 AAAGCGATCCAATCTTTAGAAACCATAATCTCGACATGGATGTTCTCTACCGCTCCGGTG 268
Query 184 AGACCTTGCAGGGGGTTGCTACATACACTCCTCGTCTT-CTTTCAGTCAACTTGAAAGGG 242
||||| |||||||||||||||||||||||||||| || ||||||||||||| ||||||
Sbjct 269 AGACCCAGCAGGGGGTTGCTACATACACTCCTCGT-TTGGTTTCAGTCAACTTAAAAGGG 327
Query 243 TCACTAGGCACCATGAGCTCACGCGGTACCCTCTACAACGAGGGTTCTTCATCAAGATCA 302
||||||| |||||||||||||||||||| || |||||||| ||||||||||||||||||
Sbjct 328 GCACTAGGGACCATGAGCTCACGCGGTACACTTTACAACGAAGGTTCTTCATCAAGATCA 387
Query 303 GATTCTTCAACAACCTGGTTTGGAGATGTTGATACTCAGAGATCTGAACCTCGAAAGAGG 362
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 GATTCTTCAGCAACCTGGTTTGGAGATGTTGATACTCAGAGATCTGAACCTCGAAAGAGG 447
Query 363 AACTTGTTTCTGCAAAGTTTGTACGAGGAGGAACATATAGTGGGTAAAGAAAAGGCGAAA 422
||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 448 AACTTGTTTCTGCAAAGTTTGTACGAGGAAGAACATGTAGTGGGGAAAGAAAAGGCGAAA 507
Query 423 GTGATTGAGGACAAAGATATTGTTGGATGCTTAGATGAGGAAGTTGAATGTTGGACTGAC 482
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 GAGATTGAGGACAAAGATATTGTTGGATGCTTAGATGAGGAAGTTGAATGTTGGACTGAC 567
Query 483 TTCTCCAAATCCCATTATCATCCTCAAAGTTTGTACGAATTGAACGGATTATGGATGGAC 542
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 568 TTCTCTAAATCCCATTATCATCCTCAAAGTTTATATGAATTGAACGGATTATGGATGGAC 627
Query 543 TCTCAGGATTTTAACAATTATGGAATTGGCAAAGATGTTTTCTCTGAGGCTTCACGTGGA 602
||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 628 TCTCAGGCTTTTAACAATTATGGAATTGGTAAAGACGTTTTCTCTGAGGCTTCACGTGGA 687
Query 603 GAGGAAATATGTGACAGACTCCGTTTTTTCGTGGAAGAGTGTGATCATATTCAGGGTATT 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 GAGGAAATATGTGACAGACTCCGTTTTTTCGTGGAAGAGTGTGATCATATTCAGGGTATT 747
Query 663 AAGTTCCTTGTGGATGATTCGGGAGGATTTTCAGCTGTAGCAGCGGATTTCCTTGAGAGC 722
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 748 AAGTTCCTAGTGGATGATTCGGGAGGATTTTCCGCTGTAGCAGCGGATTTCCTTGAAAAC 807
Query 723 ATGGCAGATGAGTACACGAACGTACCTGTATTGCTATATTCCGTAAGGAGTCCAATGTCA 782
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 808 ATGGCAGATGAGTACACGAATGTACCTGTATTGCTATATTCCGTAAGGACTCCAATGTCA 867
Query 783 CAGATGAGC-CAGAAAAAGACAGTTTCAAACAAGCTTCACGATGCGATATCGTTTTCTCG 841
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 CAGATGAGCTC-GAAAAAGACAGTTTCAAACAAGCTTCACGATGCGATATCGTTTTCTCG 926
Query 842 ACTCTCTTCCTTTTGTAAACTCTTCACTCCAATCGGTTTACCATCCTTGACCGGAAGTAA 901
|||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 927 ACTCTCATCCTTTTGTAAACTCTTCACTCCAATCGGTTTACCATCTTTGACAGGAAGTAA 986
Query 902 AGCATCAAAATTTCTTAATCTCGGTGATGAGAAACCTTATCGAAGCAGTGCAGTGTACGC 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 987 AGCATCAAAATTTCTTAATCTCGGTGATGAGAAACCTTATCGAAGCAGTGCAGTGTACGC 1046
Query 962 CGCTGCTCTACATTCAAGCACAATCCCTTTCCGAATGCAACCCACTAGCTCAGATTCAAG 1021
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1047 CGCTGCTCTACATTCAAGCACAATACCTTTCCGAATGCAACCCACTAGCTCAGATTCAAG 1106
Query 1022 TGAAGTGTCAAATTCTATGGATGTTAATACACTTGTACAGCTTTTAACGGGTCGTGGTAG 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 TGAAGTGTCAAATTCTATGGATGTTAATACACTTGTACAGCTTTTAACGGGTCGTGGTAG 1166
Query 1082 ACAAAACATAGTGTCGATTTTAGACTCTGCAATGCCAGCTCCTACATTAGCAGGGAAGCA 1141
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1167 ACAAAACATAGTGGCGATTTTAGATTCTGCAATGCCAGCTCCTACATTAGCAGGGAAGCA 1226
Query 1142 ATTAGAGAATACCCTTTTAACGAGTTTGCAAGCACTAACACCGCAAGTAACTGAAGATGT 1201
|||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 1227 ATTAGAGAATACTCTTTTAACGAGTTTGCAAGCACTAACGCCGGAAGTAACTGAAGATGT 1286
Query 1202 GGAAGACGATCAAGCGGTTGAGTCAATGTGTATACTTGGAGCCCTTAGATCAGAAGATAC 1261
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 AGAAGACAATCAAGCGGTTGAGTCAATGTGTATACTTGGAGCCCTTAGATCAGAAGATAA 1346
Query 1262 AGAAGCATTGGTTTCAGAAGTGAAGAATGCGGTTGATGCATCTTACGAACAGGCAACAAC 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1347 AGAAGCATTGGTTTCAGAAGTGAAGAATGCGGTTGATGCATCTTACGAACAGGCAACCAC 1406
Query 1322 CAAAGGGAAGCCGTTGATTTGCAATCTCTCTGTCTCGCGTTGTCCTCTTCCGGTACCATT 1381
||||||||| |||||| |||||||||| || || ||||||||||||||||||||||||||
Sbjct 1407 CAAAGGGAAACCGTTGTTTTGCAATCTATCGGTTTCGCGTTGTCCTCTTCCGGTACCATT 1466
Query 1382 ACCGTTTCCTTCTATATTTGGAAACCTTGTTGGGAGGAAAGGTGAGATACTGAGCAGTCC 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1467 ACCGTTTCCTTCTATATTTGGAAACCTTGTTGGGAGGAAAGGTGAGATACTGAGCAGTCC 1526
Query 1442 GGTCTCGGATTCTCTGTACAGAGGCTCACTGGATGTTCACTCCATACCAGTAGCAACAAG 1501
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1527 AGTCTCGGATTCTCTCTACAGAGGCTCACTAGATGTTCACTCCATACCAGTAGCAACAAG 1586
Query 1502 ATGGAGATCTTCGAGCGCAGTTTTGCCATTTTTGGAAAGTAGAATGGGGAATTTAGAGAA 1561
|||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1587 ATGGAGATCTTCAAGCGCAATTTTGCCATTTTTGGAAACTAGAATGGGGAATTTAGAGAA 1646
Query 1562 ACTTGGGATCCAATGGGGAGCCATGGGATCAGATGTGGTTAGGGCATGGGGATTTGGGAG 1621
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1647 ACTTGGGATCCAGTGGGGAGCCATGGGATCAGATGTGGTTAGGGCCTGGGGATTTGGGAG 1706
Query 1622 AGAAGAATTGCAAGAAATGAGGGAGAATCTGTCAAAAATGGTATCTGAGCTGAATCCTCA 1681
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1707 AGAAGAATTGCAGGAAATGAGGGAGAATCTGTCAAAAATGGTATCTGAGCTGAATCCTCA 1766
Query 1682 GTTTTTCGAATCTTCGGATTCAGATTAGTTATGTCTTAAAACTAATATGTT 1732
|||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1767 GTTTTTCGAATCTTCGGATTCAGATTAGTTATGTCTTAAAACGAATATGTT 1817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85642129770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5