BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944179
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
AT4G37220.1 | Symbols: | Cold acclimation protein WCOR413 fami... 893 0.0
> AT4G37220.1 | Symbols: | Cold acclimation protein WCOR413 family
| chr4:17515080-17516162 FORWARD LENGTH=828
Length=828
Score = 893 bits (483), Expect = 0.0
Identities = 599/655 (91%), Gaps = 8/655 (1%)
Strand=Plus/Plus
Query 1 AAATAAAATAAAACTTAAAAATGGGGAGGGTTGAGTTTTTGGCCATGAAGACTGAGGAGA 60
||| ||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 7 AAACAAACTAAAACTTAAAAATGGGAAGGGGTGAGTTTTTGGCCATGAAGACTGAGGAGA 66
Query 61 ACACGGCGAACCTGATCAATTCTGATCTGAATGAGTTCGTCGCCGCTGCGAAGAAGCTCG 120
|| |||| |||||||||||||| ||| |||||||||||||||||||||| ||||||||||
Sbjct 67 ACGCGGCTAACCTGATCAATTCCGATATGAATGAGTTCGTCGCCGCTGCAAAGAAGCTCG 126
Query 121 TGAAAGATGTAGGGATGCTCGGCGGGTTAGGCTTTGGCACGTCTTTCCTTCAATGGGCCG 180
||||||| |||||||||||||||||| |||| ||||||||||| |||| ||||||||||
Sbjct 127 TGAAAGACGTAGGGATGCTCGGCGGGGTAGGTTTTGGCACGTCAGTCCTCCAATGGGCCG 186
Query 181 CTTCAATC-TCGGCCATTTATCTGTTGATATTGGATCGCACCAACTGGAGAACCAAAATG 239
|||||||| || || ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 187 CTTCAATCTTC-GCTATTTATCTGTTGATATTGGATCGTACCAACTGGAAAACCAAAATG 245
Query 240 TTGACTACCCTTTTAGTGCCATACAtttttttCACACTTCCTTCGGTTATCTTTCAGTTC 299
||||| ||||||||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 246 TTGACCACCCTTTTAGTACCATACATCTTTTTCACACTTCCTTCGGTTATCTTCCAGTTC 305
Query 300 TTTAGCGGAGATTTTGGGAAATGGATTGCTCTCATCGCGATCACAATCAGGCTTTTCTTC 359
||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 306 TTTAGCGGAGACTTTGGGAAATGGATTGCTCTCATCGCGATCATAGTCAGGCTTTTCTTC 365
Query 360 CCTAAAGAATTTCCAGATTGGCTAGAGATTCCGGCAGGATTAATTCTTCTTATAGTGGTT 419
||||||||||||||||| |||||||||||||||| || ||| |||||| || | |||| |
Sbjct 366 CCTAAAGAATTTCCAGAGTGGCTAGAGATTCCGGTAGCATTGATTCTTATTGTGGTGG-T 424
Query 420 G-CACCGAGCCTCATAGCTTGGACACTAAGAGAAAGTTGGGTTGGGGCAGTAATATGTCT 478
| | |||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||
Sbjct 425 GTCGCCGAGCCTTATAGCTTGGACACTAAGAGAAAGCTGGGTTGGAGCAGTCATATGTCT 484
Query 479 TGTAATAGCATGTTACCTTTTCCATGAACACATTAAAGCTTCTGGTGGATTCAAAAACTC 538
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 485 AGTAATAGCATGTTACCTTTTCCATGAACACATTAAAGCTTCAGGTGGATTCAAAAACTC 544
Query 539 ATTTACTCAGAAGAATGGAATCTCCAATACCATTGGGATCGTTGCTCTCCTCGTTTATCC 598
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 545 TTTTACTCAAAAGAATGGAATCTCCAATACCATTGGGATCGTTGCCCTCCTCGTTTACCC 604
Query 599 GGTCTGGACCATATTTTTTCACATCTTCTAAGTCAAT---ACC-ATTGGCTTGTA 649
||| |||||||| || ||||||||||| ||||||||| ||| ||||| |||||
Sbjct 605 GGTTTGGACCATCTTCTTTCACATCTTTTAAGTCAATCCGACCCATTGGTTTGTA 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31346107728
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5