BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944181

Length=496
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G37235.1 | Symbols:  | Uncharacterised protein family (UPF04...   758    0.0  


> AT4G37235.1 | Symbols:  | Uncharacterised protein family (UPF0497) 
| chr4:17517985-17519785 FORWARD LENGTH=640
Length=640

 Score =  758 bits (410),  Expect = 0.0
 Identities = 466/492 (95%), Gaps = 8/492 (2%)
 Strand=Plus/Plus

Query  11   GTTCAAGGAGATGGTTAG---AACGGCGTCGTTTGGAACCAGCTCAAGCTTTGTTCTTCG  67
            ||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||
Sbjct  58   GTTCAAGGAGATGGTAAGAACAACGGCGTCGTTTGGAACCAGCTCAAGCTTTGTTCTTCG  117

Query  68   TCTCGGACAAACTCTGTTTTCCTCTGCTTCGCTTCTTTTCATGTGCTTTAACGATGACGA  127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  118  TCTCGGACAAACTCTGTTTTCCTCTGCTTCGCTTCTTTTCATGTGCTTTAACGATGACGA  177

Query  128  AGATTTCTATGCTTACACTGCCTTTTGTTATTTAGTCACAGTCATGGGTTTAGTGACACC  187
            ||||||||| ||||||||  |||| |||||| ||||||||||||||||||||||||||||
Sbjct  178  AGATTTCTACGCTTACACCACCTTCTGTTATCTAGTCACAGTCATGGGTTTAGTGACACC  237

Query  188  TTGGAGCGTGACGTTAGCCCTAATGGAAGCTTACTCAATCATCCTCCAACAACTTCCTAT  247
            |||||||||||||||||||||||||||||||||||||||| || |  || ||||||||||
Sbjct  238  TTGGAGCGTGACGTTAGCCCTAATGGAAGCTTACTCAATCCTCGTAAAAAAACTTCCTAT  297

Query  248  GCAAGCAACAGTTATATCTGTCATCGTCGCTGGAGATTTTGTTTTGTCGTTTTTGTCTTT  307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  298  GCAAGCAACAGTTATATCTGTCATCGTCGCTGGAGATTTTGTTTTGTCGTTTTTGTCATT  357

Query  308  GGGAGGTGCTTGCTCGACGGTGAGCGTGGCCGTACGTTTGATCGG-CGCCGGAGAGAAGC  366
            ||||||||| |||||||||| |||||||||||||| |||||| || ||||||||||||||
Sbjct  358  GGGAGGTGCATGCTCGACGGCGAGCGTGGCCGTACTTTTGAT-GGACGCCGGAGAGAAGC  416

Query  367  AATGTGATCGGTATAAG-TCATCGGCGACAATGGCGTTTTTGTCTTCGTTTCTTTCATTT  425
            ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct  417  AATGTGATCGGTATAAGCT-ATCGGCGACAATGGCGTTTTTGTCTTCGTTTCTTTCATTT  475

Query  426  GCTTCCACTTTATTTAATTTTCGTCTTCTTCCTTCTCTAATGTCTCACTAATTAG-ATTT  484
            ||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct  476  GCTTCAACTTTCTTTAATTTTTGTCTTCTTCCTTCTCTAATGTCTCACTAATTAGGATTT  535

Query  485  CATTTCACCAGT  496
            ||||||||||||
Sbjct  536  CATTTCACCAGT  547



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23660283237


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5