BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944183

Length=247
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G42825.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   268    1e-71


> AT5G42825.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr5:17171964-17172742 
FORWARD LENGTH=779
Length=779

 Score =  268 bits (145),  Expect = 1e-71
 Identities = 219/253 (87%), Gaps = 11/253 (4%)
 Strand=Plus/Plus

Query  1    GGAAAGCTTTTGGTCTCTGCATGCCGACCGGAATTTTTCCGGTAATAGCCGTCCCGAGTG  60
            ||||||||||| |||||  ||  || ||  ||| ||||||| | |||||||| || | | 
Sbjct  61   GGAAAGCTTTTTGTCTC--CA--CCTACAAGAA-TTTTCCGATGATAGCCGTTCCAAATA  115

Query  61   ACTCGGGCTTTTGCCCGGTATCTTCCAGCTCCTTTAGTGGAGATGACCGGTTCCTGTTCG  120
            | | ||||||||||||||||||||| ||||| |||||||||||||||||||||| || ||
Sbjct  116  ATTTGGGCTTTTGCCCGGTATCTTCTAGCTCTTTTAGTGGAGATGACCGGTTCCCGTACG  175

Query  121  GCAAATCCTGCTTCCATGAGAGGTTTTGGCCGCTTGTATCCTTGCTCGTAGTCGATCAGT  180
            ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  176  GCAAATCCTGCTTTCATAAGAGGTTTTGGCCGCTTGTATCCTTGCTCGTAGTCAATCAGT  235

Query  181  TTTATACTGATTGCTTTG-t-tttt--ttA-GTTTT-CAATAAATTTCAATAGATTTGAG  234
            ||||| |||||||||||| | ||||  ||  ||||| |||||||| |||| |||||||||
Sbjct  236  TTTATGCTGATTGCTTTGATATTTTAGTTTTGTTTTTCAATAAATCTCAACAGATTTGAG  295

Query  235  ATGGTAATTAGTT  247
            |||||||||||||
Sbjct  296  ATGGTAATTAGTT  308



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11209708027


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5