BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944190
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36830.1 | Symbols: HOS3-1 | GNS1/SUR4 membrane protein fami... 1384 0.0
> AT4G36830.1 | Symbols: HOS3-1 | GNS1/SUR4 membrane protein family
| chr4:17349436-17350480 FORWARD LENGTH=1045
Length=1045
Score = 1384 bits (749), Expect = 0.0
Identities = 823/860 (96%), Gaps = 0/860 (0%)
Strand=Plus/Plus
Query 6 GATCAAAACCAAACTATGTCAACGGCTCTGATCAACTCTCTCACCTACTACCTCTCCGAA 65
||||||| ||||||||||||||||||||||| |||||| | ||||||| ||||||||||
Sbjct 61 GATCAAATTCAAACTATGTCAACGGCTCTGATTAACTCTATTACCTACTTCCTCTCCGAA 120
Query 66 CATCCATACATCGTCGGATTCCGTTGGAGCAACAGCCAATCATGGGGCTCCACGTGGTCT 125
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 CATCCATACATCGTCGGATTCCGTTGGAGTAACAGCCAATCATGGGGCTCCACGTGGTCT 180
Query 126 Ttcctcttcacctcaatctccctctacatcgccgtctcatcctccctccacatcctcctc 185
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TTCCTCTTCACATCAATCTCCCTCTATATCGCCGTCTCATCCTCCCTCCACATCCTCCTC 240
Query 186 tccGCCGTACTCCGACGTAACCGTTCCGTTCCTTTAGGCCACATCCCCGAAATCCACAGC 245
|||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 TCCGCCGTACGCCGAAGTAACCGTTCCGTTCCTTTAGGTCACATCCCCGAAATCCACAGC 300
Query 246 CTTCTCATGTCGATCCTCTCCGCCACCATTTTCGCCGGAATCCTCCTCTCCGCCGCCGCA 305
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 301 CTTCTCATGTCGATCCTCTCCGCCACCATTTTCGCCGGAATCCTCCTCTCCGCTGCCGCA 360
Query 306 GAGATCCGTGACACACGGTGGTTGTGGCGGCGGAGCAAAACCTCCACTCCTCTCCAATGG 365
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 361 GAGATCCGTGACACACGGTGGTTATGGCGGCGGAGCAAAACCGCCACTCCTCTCCAATGG 420
Query 366 CTCCTCTGTTTCCCTCTCGGGACTCGTCCCTCTGGTCGTGTCTTCTTTTGGTCATACGCG 425
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 421 CTTCTCTGTTTCCCTCTCGGGACTCGTCCCTCTGGTCGTGTCTTCTTTTGGTCATACGTG 480
Query 426 TTTTACATCACGCGCTTTCTCCACATGTTCCGTACGATCTTCGCCGTTTTACGTCGTCGG 485
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | |||
Sbjct 481 TTTTACCTCACGCGCTTTCTCCACATGTTCCGTACGATTTTCGCCGTTTTACGTAGCCGG 540
Query 486 AGACTCTCCGTGTCTCAGCTCTTCTGTAACTCCGTCATGGCATTCACGTCGTTCCTTTGG 545
|| ||| |||||||||||||||| ||||||||||||||||| |||||||| ||||| |||
Sbjct 541 AGGCTCGCCGTGTCTCAGCTCTTTTGTAACTCCGTCATGGCCTTCACGTCTTTCCTCTGG 600
Query 546 CTCGAATTCTCGCAGTCGTACCAGATTCTAGCGATTCTATCGACGACGCTGGTTTACTCT 605
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 601 CTAGAATTCTCGCAGTCGTACCAGATTCTAGCGATTCTATCGACGACTCTGGTTTACTCG 660
Query 606 GTGGTTTACGGTTACAGATTTTGGACCGGGTTTGGTTTACCTGGTTCGGCTTTCCCTTCG 665
|||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 661 GTGGTTTACGGTTATAGATTCTGGACCGGGTTTGGTTTACCCGGTTCGGCTTTCCCTTCG 720
Query 666 TTTGTGGTGAATTGTCAGTTGGTTCTCGTGGGCTGTAATCTCGTGTCTCACGCTGGGGTT 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTTGTGGTGAATTGTCAGTTGGTTCTCGTGGGCTGTAATCTCGTGTCTCACGCTGGGGTT 780
Query 726 CTTACGATGCACCTCTTTAAAGGTGGATGCAATGGGATCGGCGCGTGGGGTTTAAACTCG 785
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 781 CTTACGATGCACCTCTTTAAAGGTGGATGCAATGGGATTGGCGCGTGGGGTTTAAACTCG 840
Query 786 GTTCTCAACGGTGCGATTTTGTTGCTTTTCCTTAACTTTTATGTGAGAATGCATTCTCCA 845
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 841 GTTCTCAACGGTGCGATTTTGTTGCTTTTTCTTAACTTTTATGTGAGAATGCATTCGCCA 900
Query 846 ATGCGACGCCGTATTAATAA 865
|||||||||| |||||||||
Sbjct 901 ATGCGACGCCATATTAATAA 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45662839623
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5