BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944195
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36800.1 | Symbols: RCE1 | RUB1 conjugating enzyme 1 | chr4:... 974 0.0
> AT4G36800.1 | Symbols: RCE1 | RUB1 conjugating enzyme 1 | chr4:17340950-17342759
REVERSE LENGTH=1060
Length=1060
Score = 974 bits (527), Expect = 0.0
Identities = 576/600 (96%), Gaps = 2/600 (0%)
Strand=Plus/Plus
Query 1 AGTTTCTT-A-AGAAGTGAGAAGCAATGATTGGGTTATTTAAAGTTAAGGAAAAGCAAAG 58
|||||||| | |||||| |||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 194 AGTTTCTTAAGAGAAGTCAGAAACAATGATTGGGTTGTTTAAAGTAAAGGAAAAGCAAAG 253
Query 59 AGAGCAAGCTCAAAATGCTACTAGAGGAGGAGCTTCTGTCAAGAAGCAATCTGCTGGGGA 118
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 254 AGAACAAGCTCAAAATGCTACTAGAGGAGGAGCTTCTGTTAAGAAGCAATCTGCTGGCGA 313
Query 119 ACTTCGTCTTCACAAAGATATATCAGAGTTGAACCTTCCTAGCTCTTGTTCGATATCTTT 178
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 314 ACTTCGTCTTCACAAAGATATATCAGAGTTGAACCTTCCTAGCTCTTGTTCAATATCTTT 373
Query 179 CCCAAATGGAAAAGATGATTTGATGAACTTTGAAGTGTCCATTAAACCCGATGATGGATA 238
|||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 374 TCCAAATGGCAAAGATGATTTGATGAACTTTGAAGTATCCATTAAACCTGATGATGGATA 433
Query 239 CTACCACAATGGTACGTTTGTTTTCACATTCCAAGTTTCTCCTGTGTATCCACATGAAGC 298
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 434 TTACCACAATGGTACGTTTGTTTTCACATTCCAAGTCTCTCCTGTGTATCCACATGAAGC 493
Query 299 TCCAAAAGTTAAATGCAAAACCAAGGTTTATCATCCCAATATCGATTTGGAAGGAAACGT 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 TCCAAAAGTTAAATGCAAAACCAAGGTTTATCATCCCAATATCGATTTGGAAGGAAACGT 553
Query 359 TTGCCTGAACATCTTGCGTGAAGATTGGAAACCGGTTCTTAACATAAACACAGTTATCTA 418
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 554 TTGCCTGAACATCTTGCGTGAAGATTGGAAACCTGTTCTTAACATTAACACAGTTATCTA 613
Query 419 CGGACTCTTCCATCTGTTCACGGAACCCAATTCTGAAGATCCCTTGAACCATGATGCTGC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 CGGACTCTTCCATCTGTTCACGGAACCCAATTCTGAAGATCCCTTGAACCATGATGCTGC 673
Query 479 AGCAGTTTTAAGGGATAACCCAAAGCTGTTTGAGACCAATGTTCGCAGGGCCATGACCGG 538
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 674 AGCAGTTTTGAGGGATAACCCAAAGCTCTTTGAGACCAATGTTCGCAGGGCCATGACCGG 733
Query 539 GGGATATGTTGGTCAAACCTTTTTCCCGCGCTGTATCTAACAAAGCTCTGGTTTGTCTTC 598
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 734 TGGATATGTCGGTCAGACCTTTTTCCCGCGTTGTATCTAACAAAGCTCTGGTTTGTCTTC 793
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28784166231
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5