BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944199
Length=996
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36780.1 | Symbols: BEH2 | BES1/BZR1 homolog 2 | chr4:173325... 1448 0.0
> AT4G36780.1 | Symbols: BEH2 | BES1/BZR1 homolog 2 | chr4:17332517-17334349
REVERSE LENGTH=1407
Length=1407
Score = 1448 bits (784), Expect = 0.0
Identities = 906/965 (94%), Gaps = 7/965 (1%)
Strand=Plus/Plus
Query 17 TTCAATGGCGGCC---ggaggaggaggaggaggaggaTCATCGTCGGGACGAACTCCGAC 73
||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 134 TTCAATGGCCGCCGGAGGAGGAGGAGGAGGAGGAGGATCATCGTCGGGACGTACTCCGAC 193
Query 74 GTGgaaagagagagagaacaataagaagagggaaagaagaagaagagCCATCACTGCTAA 133
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 194 GTGGAAAGAGAGAGAGAACAATAAGAAGAGAGAAAGAAGAAGAAGAGCCATCACTGCTAA 253
Query 134 GATTTACTCTGGTCTTAGAGCTCAAGGTAACTATAAGCTTCCTAAGCACTGCGATAACAA 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 GATTTACTCTGGTCTTAGAGCTCAAGGTAACTATAAGCTTCCTAAGCACTGCGATAACAA 313
Query 194 CGAGGTTCTTAAAGCTCTCTGTCTTGAAGCTGGTTGGATCGTCGAAGACGACGGTACCAC 253
|||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 314 CGAGGTTCTTAAAGCTCTCTGTCTCGAAGCTGGTTGGATCGTCGAAGACGATGGCACCAC 373
Query 254 TTATCGCAAGGGTTTTAAGCCACCAGCATCAGATATTTCAGGAACTCCTACAAACTTCAG 313
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 TTATCGCAAGGGGTTTAAGCCACCAGCATCAGATATTTCAGGAACTCCTACAAACTTCAG 433
Query 314 CACTAATTCTTCAATCCAACCAAGTCCACAGTCATCTGCTTTTCCAAGTCCTGCGCCTTC 373
||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||| |||||
Sbjct 434 CACAAATTCATCAATCCAACCAAGTCCACAATCATCAGCTTTTCCAAGTCCTGCACCTTC 493
Query 374 TTACCACGGAAGTCCCGTTTCATCATCCTTCCCGAGTCCATCTCGCTGCGATGGAAATCC 433
|||||||||||||| || |||||||||||||||||||||||||||| || ||||| ||
Sbjct 494 GTACCACGGAAGTCCAGTCTCATCATCCTTCCCGAGTCCATCTCGCTATGACGGAAACCC 553
Query 434 TTCTTCGTACCTTCTCCTTCCGTTCCTACACAACATCGCTTCTTCTATTCCTGCAAACCT 493
|||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 554 TTCTTCATACCTTCTTCTTCCGTTCCTACACAACATCGCTTCTTCGATTCCTGCTAACCT 613
Query 494 TCCGCCGCTTAGAATTTCCAACAGTGCGCCTGTGACTCCTCCGTTGTCTTCTCCTACTTC 553
||| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 614 TCCACCTCTTAGAATATCCAACAGTGCGCCTGTGACTCCTCCGTTGTCATCTCCTACTTC 673
Query 554 TCGTGGTTCAAAGCGGAAACTCACTTCAGAACAATTACCGAATGGTGGGTCTTTACACGT 613
||||||||| ||||||||||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct 674 TCGTGGTTCGAAGCGGAAACTTACTTCAGAGCAATTACCAAATGGCGGGTCTTTACACGT 733
Query 614 TTTGAGGCATCCGCTTTTCGCTATCTCAGCTCCATCTAGTCCTACTCGTCGTGCTGGTCA 673
|||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 734 TTTGAGACATCCGCTTTTCGCTATCTCTGCTCCATCTAG----ACTCGTCGTGCTGGTCA 789
Query 674 CCAAACACCACCTACAATACCGGAATGTGATGAGTCCGAGGAAGATTCGATAGAGGATTC 733
|||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 790 CCAAACGCCACCTACAATACCGGAATGTGATGAGTCCGAGGAGGATTCGATCGAGGATTC 849
Query 734 AGGAAGGTGGATCAATTTCCAATCTACAGCTCCTACTTCACCAACATTCAATCTTGTTCA 793
||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 850 AGGAAGGTGGATCAATTTCCAATCTACTGCTCCTACTTCACCAACATTTAACCTTGTTCA 909
Query 794 GCAAACATCTATGGCCATTGATATGAAAAGATCAGATTGGGGAATGTCGGGAATGAACGG 853
|||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||
Sbjct 910 GCAAACTTCTATGGCCATTGATATGAAAAGGTCAGACTGGGGAATGTCCGGAATGAATGG 969
Query 854 GAGAGTTACAGAGTTTGAGTTCGAGAATGGAACAGTCAAGCCATGGGAAGGCGAAATGAT 913
||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 970 GAGAGGGGCAGAGTTTGAGTTTGAGAATGGAACAGTTAAGCCGTGGGAAGGCGAAATGAT 1029
Query 914 TCATGAAGTTGGCGTAGAAGATCTCGAACTCACTCTCGGTGGCACTAAAGCCCGATGCTG 973
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1030 TCATGAAGTTGGCGTAGAAGATCTCGAACTCACTCTCGGTGGCACTAAAGCCAGATGCTG 1089
Query 974 AAAAA 978
|||||
Sbjct 1090 AAAAA 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48777356737
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5