BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944202
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36750.1 | Symbols: | Quinone reductase family protein | ch... 1334 0.0
> AT4G36750.1 | Symbols: | Quinone reductase family protein |
chr4:17324571-17326457 FORWARD LENGTH=1135
Length=1135
Score = 1334 bits (722), Expect = 0.0
Identities = 821/867 (95%), Gaps = 14/867 (2%)
Strand=Plus/Plus
Query 1 AATTT-GG-GAGAATTTTCTCGATGGGGAAAGGAGGAGGATGTGTTCCGAGCAAGAAGAA 58
||||| || |||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 50 AATTTGGGAGAGAATATTCTCGATGGGGAAAGGAGGAGGTTGTGTTCCGAGCAAGAAGAA 109
Query 59 GAAGCCGTCGTCTCTCGCCACCACCGGCGATGGTCCCGGAATCGACGATGATAACGACGC 118
|||| | || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 110 GAAG-C--CG------GCCACCACCGGCGATGGTCCCGGAATCGATGATGATAACGACGC 160
Query 119 AACTAATGCTCCGATCCAAATTGATGATGATCAAACCACCATTGACGGCGATCGAACAAC 178
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 161 TACTAATGCTCCGATCCAAATTGACGATGATCAAACCACCATTGACGGCGATCGAACAAC 220
Query 179 GGCGACGAATACTGCAGGAACAACAACACCAGCGATT--T-CTACGGCTGCTAAGATCTC 235
|||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 221 GGCGACGAATACTGGAGGAACAACAACACCAGCGATTACTACTACGGCTGCTAAGATCTC 280
Query 236 GTCACCGCTCAAGATCTTCGTCGTGTTCTATTCGATGTACGGACATGTGGAGAGCTTAGC 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 GTCACCGCTCAAGATCTTCGTCGTGTTCTATTCGATGTACGGACATGTGGAGAGCTTAGC 340
Query 296 GAAGAGAATGAAGAAGGGAGTGGATAGTGTCCAAGGAGTGGAGGCGACGCTGTACAGAGT 355
|||||| ||||| |||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 341 GAAGAGGATGAAAAAGGGAGTGGATAGCGTCGAAGGAGTGGAGGCGACGTTGTACAGAGT 400
Query 356 TCCGGAGACGCTTTCGCAGGAGGTTGTTGAGCAGATGAAGGCGCCGGTTAAGGATTTGGA 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 TCCGGAGACGCTTTCGCAGGAGGTTGTTGAGCAGATGAAGGCGCCGGTTAAGGATTTGGA 460
Query 416 GATTCCGGAGATTACGGCGGCGGAATTGGCGGCGGCTGATGGATTTTTGTTTGGGTTTCC 475
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||
Sbjct 461 GATTCCGGAGATTACGGCGGCGGAATTGACGGCGGCTGATGGATTTCTGTTTGGATTTCC 520
Query 476 GACTAGGTATGGTTGTATGGCTGCGCAGATGAAGGCGTTTTTTGATTCGACGGGATCATT 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 GACTAGGTATGGTTGTATGGCTGCGCAGATGAAGGCGTTTTTTGATTCGACGGGATCATT 580
Query 536 GTGGAAGGAGCAGAGTCTCGCTGGTAAGCCTGCTGGATTCTTTGTGAGTACTGGGACTCA 595
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 581 GTGGAAGGAGCAGAGTCTTGCTGGTAAGCCTGCTGGATTCTTTGTGAGCACTGGCACTCA 640
Query 596 AGGAGGTGGTCAAGAGACTACTGCATGGACAGCAATCACACAGCTGGTGCACCACGGGAT 655
||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 641 AGGAGGTGGCCAAGAGACCACTGCATGGACAGCAATCACACAGCTTGTGCACCATGGGAT 700
Query 656 GCTGTTTGTACCCATAGGCTACACATTTGGAGCTGGAATGTTCAAGATGGACTCGATCCG 715
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 701 GCTATTTGTACCAATAGGCTACACATTTGGAGCTGGAATGTTCAAGATGGACTCGATACG 760
Query 716 GGGAGGCTCACCTTATGGAGCTGGTGTGTTTGCTGGTGATGGCTCAAGAGAAGCAACAGA 775
|||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 761 TGGAGGCTCTCCTTATGGAGCAGGTGTGTTCGCTGGTGATGGGTCAAGAGAAGCAACAGA 820
Query 776 AACAGAATTGGCTCTTGCTGAACATCAAGGAAACTACATGGCTGCAATAGTCAAGAGACT 835
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 821 AACAGAATTGGCTCTTGCTGAACATCAAGGAAACTACATGGCTGCAATAGTCAAAAGACT 880
Query 836 TGCTCAACCTTAAAAGaaaaaaaaaaa 862
||||||||||||||| ||||| |||||
Sbjct 881 TGCTCAACCTTAAAACAAAAACAAAAA 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42347385921
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5