BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944204
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36730.1 | Symbols: GBF1 | G-box binding factor 1 | chr4:173... 1530 0.0
> AT4G36730.1 | Symbols: GBF1 | G-box binding factor 1 | chr4:17309612-17312488
REVERSE LENGTH=1506
Length=1506
Score = 1530 bits (828), Expect = 0.0
Identities = 904/941 (96%), Gaps = 4/941 (0%)
Strand=Plus/Plus
Query 3 AGTAAGTAAGCTTAT-ACACAATGGGAACGAGCGAAGACAAGATGCCATTTAAGCCTACC 61
||| ||||||||||| | |||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 AGT-AGTAAGCTTATAAAACAATGGGAACGAGCGAAGACAAGATGCCATTTAAGACTACC 359
Query 62 AAACCAACATCTTCGGCTCAGGAAGTTCCTCCCACACCGTATCCAGATTGGTC-AAATTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 360 AAACCAACATCTTCGGCTCAGGAAGTTCCTCCCACACCGTATCCAGATTGG-CAAAATTC 418
Query 121 AATGCAGGCTTATTATGGCGGAGGAGGTACGCCAAATCCTTTTTTCCCATCCCCAGTTGG 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 419 AATGCAGGCTTATTATGGCGGAGGAGGTACTCCAAATCCTTTTTTCCCATCCCCAGTTGG 478
Query 181 ATCTCCTAGTCCTCACGCTTATATGTGGGGCGCTCAACACCATATGATGCCGCCTTATGG 240
|||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||
Sbjct 479 ATCTCCTAGTCCTCACCCCTATATGTGGGGTGCTCAACACCATATGATGCCGCCTTATGG 538
Query 241 GACCCCAGTTCCGTACCCAGCAATGTATCCCCCGGGAGCAGTCTATGCTCATCCTAGCAT 300
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 539 CACCCCAGTTCCGTACCCAGCAATGTATCCCCCGGGGGCAGTCTATGCTCATCCTAGCAT 598
Query 301 GCCCATGCCTCCTAATTCTGGTCCAACCAACAAGGAGACTGTGAATGACCAAGCTTCTGG 360
|||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||||||||
Sbjct 599 GCCCATGCCTCCTAATTCTGGTCCTACCAACAAGGAGCCTGCGAAGGACCAAGCTTCTGG 658
Query 361 CAAGAAGTCAAAGGGGAACTCGaaaaaaaaGGGTGAAGGAGGTGATAAAGCGCTCTCTGG 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 659 CAAGAAGTCAAAGGGGAACTCGAAAAAAAAGGCTGAAGGAGGTGATAAAGCGCTCTCTGG 718
Query 421 TTCAGGGAACGATGGTGTCTCTCATAGTGATGAAAGTGTCACAGCGGGTTCATCTGATGA 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TTCAGGGAACGATGGTGCCTCTCATAGTGATGAAAGTGTCACAGCGGGTTCATCTGATGA 778
Query 481 AAATGAAGAGAATGCCAATCAACAGGAACAAGGTTCAGTTAGAAAGCCGAGCTTTGGACA 540
|||||| ||||||||||||||||||||||| |||||| || ||||||| |||||||||||
Sbjct 779 AAATGATGAGAATGCCAATCAACAGGAACAGGGTTCAATTCGAAAGCCAAGCTTTGGACA 838
Query 541 GATGCTTGCGGACGCAAGTTCTCAAAGTACTACTGGTGAAATCCAAGGTTCGGTGCCCAT 600
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 839 GATGCTTGCTGACGCAAGTTCTCAAAGTACGACTGGTGAAATCCAAGGTTCGGTGCCCAT 898
Query 601 GAAGCCGGTAGCCCCGGGGACTAATCTGAATATCGGGATGGACTTATGGTCTTCCCAAGC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 GAAGCCGGTAGCCCCGGGGACTAATCTGAATATCGGGATGGACTTATGGTCTTCCCAAGC 958
Query 661 TGGTGTACCTGTGAAGGATGAACGAGAGCTCAAGAGGCAGAAGAGGAAACAGTCTAACCG 720
||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 959 TGGTGTACCAGTGAAGGATGAACGAGAGCTCAAGCGGCAGAAGAGGAAACAATCTAACCG 1018
Query 721 TGAATCTGCTAGGCGGTCTAGATTGCGGAAGCAGGCGGAATGCGAACAACTTCAACAGAG 780
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 1019 TGAATCCGCTAGGCGGTCTAGATTGCGGAAGCAGGCCGAATGCGAACAACTTCAACAAAG 1078
Query 781 AGTAGAGAGTTTGTCGAATGAGAATCAAAGCCTGAGAGATGAGCTACAAAGACTCTCATG 840
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1079 AGTAGAGAGTTTGTCGAACGAGAATCAAAGCCTGAGAGATGAGCTACAGAGACTCTCAAG 1138
Query 841 CGAATGTGAAAAGCTCAAGTCTGAGAACAACTCAATCCAGGATGAGTTGCAGAGAGTGCT 900
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1139 CGAATGTGATAAGCTCAAGTCTGAGAACAACTCAATCCAGGATGAGTTGCAGAGAGTACT 1198
Query 901 CGGAGCAGAGGCTGTAGCTAATCTAGAACAGAATGCTGCTG 941
||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TGGAGCAGAGGCTGTAGCTAATCTAGAACAGAATGCTGCTG 1239
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5