BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944205
Length=665
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36720.1 | Symbols: HVA22K | HVA22-like protein K | chr4:173... 909 0.0
AT4G36730.1 | Symbols: GBF1 | G-box binding factor 1 | chr4:173... 135 4e-31
> AT4G36720.1 | Symbols: HVA22K | HVA22-like protein K | chr4:17307769-17309867
FORWARD LENGTH=802
Length=802
Score = 909 bits (492), Expect = 0.0
Identities = 599/647 (93%), Gaps = 21/647 (3%)
Strand=Plus/Plus
Query 22 ATGAGCGGGTTTGCTTCACAGATTCCATCCATGGCGCTTCTTGGATCTGGCA-TCACCGG 80
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1 ATGAGCGGGTTTGCTTCACAGATTCCATCCATGGCGCTTCTTGGATCTGG-ACTCACCGG 59
Query 81 CGAGGTTGGGTTGCGTGTATTGCTCTCTCCACTTAGTTCCAATATCGTACTTCGTACAGC 140
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 60 CGAGGTTGGGTTGCGTGTATTGTTCTCTCCACTTAGTTCCAATATCGTACTTCGTACAGC 119
Query 141 ATGCTGCTCCATTGGCATCGGGTTGCCTGTGTACTCTACCTTCAAGGCAATTGAGAGTAG 200
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 120 ATGCTGCTCCATTGGCATCGGTTTGCCTGTGTACTCTACCTTCAAGGCAATTGAGAGTGG 179
Query 201 AGATGAGAATGAACAACAGAAA-ATGCTTATTTACTGGGCAGCTTATGGTTCTTTCAGCC 259
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 180 AGATGAGAATGAACAACA-AAAGATGCTTATTTACTGGGCAGCTTATGGTTCTTTCAGCC 238
Query 260 TTGTTGAAGTATTTACGGACAAGATCATTTCTTGGTTCCCGCTGTACTATCATGTGAAGT 319
|||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 239 TTGTTGAAGTGTTCACGGACAAGATCATTTCCTGGTTCCCGCTGTACTATCATGTGAAGT 298
Query 320 TTGCGTTCCTTGTCTGGCTTCAACTCCCAACAGTCGAGGGATCAAAACAAATATATAACA 379
|||||||||| |||||||||||||||||||| || |||||||||||||| ||||| ||||
Sbjct 299 TTGCGTTCCTCGTCTGGCTTCAACTCCCAACTGTTGAGGGATCAAAACAGATATACAACA 358
Query 380 ACCAGATTCGTCCTTTCCTCCTACGACACCAAGCTAGAGTTGACCGACTCT-TGGATGGA 438
||||||| |||||||||||| ||||||||||||||||||| |||| ||| | |||||||
Sbjct 359 ACCAGATCCGTCCTTTCCTCTTACGACACCAAGCTAGAGTGGACCAACT-TGTGGATGGT 417
Query 439 GTATATGAAGAAATGGTGAAGGTCGTTAGGTCACACCAAGGAGAAATACGGTTTGTCCGA 498
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GTATATGGGGAAATGGTGAAGGTCGTTAGGTCACACCAAGGAGAAATACGGTTTGTCCGA 477
Query 499 TCAATGATTGTCAAAATCTTGGGATCAGCAGCCAATGAGGTTGCACCACCAGGCCAACGA 558
||||||||| ||||||||||||||||| | || |||| |||||||| | | |
Sbjct 478 GCAATGATTGCCAAAATCTTGGGATCAGT--C-AACGAGGATGCACCAC--G---A-C-- 526
Query 559 CTAGGAGAAATAGCAAATGATAGCCCCGAACAAGCAGAAACAAACTCGGATTCAGAATCC 618
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 527 -TAGGAGAAATAGCAAATGGTAGCCCCGTTT---CAGAAACAAACTCGGATTCAGAATCC 582
Query 619 GATTCCAATCACGAAGACTAATAAAACAAAGTGTAATCGTAGCTTTT 665
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GATTCCAATCACGAAGACTAATAAAACAAAGTGTAATCGTAGCTTTT 629
> AT4G36730.1 | Symbols: GBF1 | G-box binding factor 1 | chr4:17309612-17312488
REVERSE LENGTH=1506
Length=1506
Score = 135 bits (73), Expect = 4e-31
Identities = 73/73 (100%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 593 CAGAAACAAACTCGGATTCAGAATCCGATTCCAATCACGAAGACTAATAAAACAAAGTGT 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 CAGAAACAAACTCGGATTCAGAATCCGATTCCAATCACGAAGACTAATAAAACAAAGTGT 1437
Query 653 AATCGTAGCTTTT 665
|||||||||||||
Sbjct 1436 AATCGTAGCTTTT 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32149854080
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5