BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944205 Length=665 Score E Sequences producing significant alignments: (Bits) Value AT4G36720.1 | Symbols: HVA22K | HVA22-like protein K | chr4:173... 909 0.0 AT4G36730.1 | Symbols: GBF1 | G-box binding factor 1 | chr4:173... 135 4e-31 > AT4G36720.1 | Symbols: HVA22K | HVA22-like protein K | chr4:17307769-17309867 FORWARD LENGTH=802 Length=802 Score = 909 bits (492), Expect = 0.0 Identities = 599/647 (93%), Gaps = 21/647 (3%) Strand=Plus/Plus Query 22 ATGAGCGGGTTTGCTTCACAGATTCCATCCATGGCGCTTCTTGGATCTGGCA-TCACCGG 80 |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 1 ATGAGCGGGTTTGCTTCACAGATTCCATCCATGGCGCTTCTTGGATCTGG-ACTCACCGG 59 Query 81 CGAGGTTGGGTTGCGTGTATTGCTCTCTCCACTTAGTTCCAATATCGTACTTCGTACAGC 140 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 60 CGAGGTTGGGTTGCGTGTATTGTTCTCTCCACTTAGTTCCAATATCGTACTTCGTACAGC 119 Query 141 ATGCTGCTCCATTGGCATCGGGTTGCCTGTGTACTCTACCTTCAAGGCAATTGAGAGTAG 200 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | Sbjct 120 ATGCTGCTCCATTGGCATCGGTTTGCCTGTGTACTCTACCTTCAAGGCAATTGAGAGTGG 179 Query 201 AGATGAGAATGAACAACAGAAA-ATGCTTATTTACTGGGCAGCTTATGGTTCTTTCAGCC 259 |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 180 AGATGAGAATGAACAACA-AAAGATGCTTATTTACTGGGCAGCTTATGGTTCTTTCAGCC 238 Query 260 TTGTTGAAGTATTTACGGACAAGATCATTTCTTGGTTCCCGCTGTACTATCATGTGAAGT 319 |||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 239 TTGTTGAAGTGTTCACGGACAAGATCATTTCCTGGTTCCCGCTGTACTATCATGTGAAGT 298 Query 320 TTGCGTTCCTTGTCTGGCTTCAACTCCCAACAGTCGAGGGATCAAAACAAATATATAACA 379 |||||||||| |||||||||||||||||||| || |||||||||||||| ||||| |||| Sbjct 299 TTGCGTTCCTCGTCTGGCTTCAACTCCCAACTGTTGAGGGATCAAAACAGATATACAACA 358 Query 380 ACCAGATTCGTCCTTTCCTCCTACGACACCAAGCTAGAGTTGACCGACTCT-TGGATGGA 438 ||||||| |||||||||||| ||||||||||||||||||| |||| ||| | ||||||| Sbjct 359 ACCAGATCCGTCCTTTCCTCTTACGACACCAAGCTAGAGTGGACCAACT-TGTGGATGGT 417 Query 439 GTATATGAAGAAATGGTGAAGGTCGTTAGGTCACACCAAGGAGAAATACGGTTTGTCCGA 498 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GTATATGGGGAAATGGTGAAGGTCGTTAGGTCACACCAAGGAGAAATACGGTTTGTCCGA 477 Query 499 TCAATGATTGTCAAAATCTTGGGATCAGCAGCCAATGAGGTTGCACCACCAGGCCAACGA 558 ||||||||| ||||||||||||||||| | || |||| |||||||| | | | Sbjct 478 GCAATGATTGCCAAAATCTTGGGATCAGT--C-AACGAGGATGCACCAC--G---A-C-- 526 Query 559 CTAGGAGAAATAGCAAATGATAGCCCCGAACAAGCAGAAACAAACTCGGATTCAGAATCC 618 |||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 527 -TAGGAGAAATAGCAAATGGTAGCCCCGTTT---CAGAAACAAACTCGGATTCAGAATCC 582 Query 619 GATTCCAATCACGAAGACTAATAAAACAAAGTGTAATCGTAGCTTTT 665 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 583 GATTCCAATCACGAAGACTAATAAAACAAAGTGTAATCGTAGCTTTT 629 > AT4G36730.1 | Symbols: GBF1 | G-box binding factor 1 | chr4:17309612-17312488 REVERSE LENGTH=1506 Length=1506 Score = 135 bits (73), Expect = 4e-31 Identities = 73/73 (100%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 593 CAGAAACAAACTCGGATTCAGAATCCGATTCCAATCACGAAGACTAATAAAACAAAGTGT 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1496 CAGAAACAAACTCGGATTCAGAATCCGATTCCAATCACGAAGACTAATAAAACAAAGTGT 1437 Query 653 AATCGTAGCTTTT 665 ||||||||||||| Sbjct 1436 AATCGTAGCTTTT 1424 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32149854080 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5