BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944213
Length=236
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36648.1 | Symbols: | other RNA | chr4:17280528-17282730 RE... 296 6e-80
> AT4G36648.1 | Symbols: | other RNA | chr4:17280528-17282730
REVERSE LENGTH=2105
Length=2105
Score = 296 bits (160), Expect = 6e-80
Identities = 214/238 (90%), Gaps = 12/238 (5%)
Strand=Plus/Minus
Query 1 ATTAAGGATTTTTGGTGACCTGCCATGCAAGCGCACCTGTCATGGCAAAGGTCGGATGAC 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 ATTAAGGA-TTTTGGTGACCTGCCATGCAAGCGCACCTGTCATGGCAAAGGTCGGATGAC 444
Query 61 AAAGATGTTTATTCAGAACTATATCGTCCCTTTAAACATCTCATACACCCATCAATCAAC 120
||||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 443 AAAGATGTTTACGCAGAACTATATCGTCCCTATAAACATCTCATACATCCATCAATCAAC 384
Query 121 TTAACTCACATCAATTTCACATATCAGcttcttctctcttcttcaatctctcctctctct 180
||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 383 TTAACTCACATCAATATCACATATCAGCTTCTTCTCTCTTCTTCACCCTCTCATCTCTCT 324
Query 181 ctAGCTCCATCA-ATAATTGACG-A---A--AT-CGTCACCTAATCACAAGCTCAGTA 230
|||||||| | | |||||||| | | || | |||||| |||| ||||||||||
Sbjct 323 --AGCTCCAT-AGAGAATTGACGGATTCATCATTCATCACCTCATCAAAAGCTCAGTA 269
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10656762788
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5