BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944223

Length=393
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G36570.1 | Symbols: ATRL3, RL3 | RAD-like 3 | chr4:17254660-...   621    1e-177


> AT4G36570.1 | Symbols: ATRL3, RL3 | RAD-like 3 | chr4:17254660-17255716 
FORWARD LENGTH=400
Length=400

 Score =  621 bits (336),  Expect = 1e-177
 Identities = 361/373 (97%), Gaps = 1/373 (0%)
 Strand=Plus/Plus

Query  22   ATGGCTTCCAACTCTATGAGCTCTAGCGCTTCTTGGACACGTAAGGAGAACAAATTATTT  81
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGCTTCCAACTCAATGAGCTCTAGCGCTTCTTGGACACGTAAGGAGAACAAATTATTT  60

Query  82   GAAAGGGCGTTGGCTACATATGACCAGGACACTCCTGACCGTTGGCATAACGTTGCAAGA  141
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GAAAGGGCGTTGGCTACATATGACCAGGACACTCCTGACCGTTGGCATAACGTTGCAAGA  120

Query  142  GCAGTTGGTGGCAAATCAGCTGAAGAAGTAAGGCGACACTACGAGC-TCCTCATTAGGGA  200
            || ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  121  GCCGTTGGCGGCAAATCAGCTGAAGAAGTAAGGCGACACTACGAGCCTCCTCATTAGGGA  180

Query  201  TGTCAATGACATTGAGTCAGGGCGTTATCCACATCCCAATTACCGTTCAAATGGAAACAG  260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  181  TGTCAATGACATTGAGTCAGGGCGTTATCCACATCCCAATTACCGTTCAAATGGAAACAA  240

Query  261  CCACTGAAAGCTTTTAAGCAACTCTAAAAGGCTCTACTGAAGTCGACATGGTTCCAAAAC  320
            ||||||||||| || ||| ||||| |||||||||||||||||| ||||||||||||||||
Sbjct  241  CCACTGAAAGCATTAAAGGAACTCCAAAAGGCTCTACTGAAGTGGACATGGTTCCAAAAC  300

Query  321  CATTCACAAAGAACATCTAAGCAAAGATATCTAAATGTATTTACTTGTTTTTGTGTTACG  380
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  CATTCACAAAGCACATCTAAGCAAAGATATCTAAATGTATTTACTTGTTTTTGTGTTACG  360

Query  381  ATTATGTAAGAAT  393
            | |||||||||||
Sbjct  361  AATATGTAAGAAT  373



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18548799381


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5