BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944232
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36480.1 | Symbols: ATLCB1, LCB1, EMB2779, FBR11 | long-chai... 2518 0.0
> AT4G36480.1 | Symbols: ATLCB1, LCB1, EMB2779, FBR11 | long-chain
base1 | chr4:17218132-17221477 FORWARD LENGTH=2058
Length=2058
Score = 2518 bits (1363), Expect = 0.0
Identities = 1451/1494 (97%), Gaps = 3/1494 (0%)
Strand=Plus/Plus
Query 1 CTTTATT-AAGCAAATTAGCAATGGCTTCGAATCTCGTGGAAATGTTTAATGCTACTTTG 59
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 236 CTTTATTAAAGCAAATTAGCAATGGCTTCGAATCTCGTGGAAATGTTTAATGCTGCTTTG 295
Query 60 AATTGGGTTACTATGATGCTGGAGAGTCCTTCAGCTAGAGTTGTCTTATTTGGTTTCCCA 119
||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||
Sbjct 296 AATTGGGTTACTATGATTCTGGAGAGTCCTTCAGCTAGAGTTGTCTTGTTTGGTGTCCCA 355
Query 120 ATCCGAGGGCACTTCTTTGTGGAAGGGTTGTTGGGTGTTGTCATTGTCATTCTCCTCACT 179
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 356 ATCCGAGGGCACTTCTTTGTGGAAGGGTTGTTGGGTGTTGTCATTATCATTCTCCTCACT 415
Query 180 AGGAAGAGTTACAAACCTCCCAAGCGACCATTGACCGAGCAGGAAATAGATGAGTTATGT 239
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 416 CGGAAGAGTTATAAACCTCCCAAGCGACCATTGACCGAGCAGGAAATAGATGAGTTGTGT 475
Query 240 GATGAATGGGTTCCTGAACCTCTTATACCTCCAATTACTGAAGACATGAAGCATGAGCCA 299
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 476 GATGAGTGGGTTCCTGAACCTCTTATACCGCCAATTACTGAAGACATGAAGCATGAGCCA 535
Query 300 CCAGTTCTTGAAAGTGCTGCCAGACCGCATACAACAGTTAATGGCAAAGATGTGGTGAAT 359
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 536 CCAGTTCTTGAAAGTGCTGCTGGACCGCATACAACAGTTAATGGAAAAGATGTGGTGAAT 595
Query 360 TTTGCTTCAGCTAATTATCTTGGGCTCATTGGTCACGAGAAGTTGCTGGAATCATGTACT 419
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 596 TTTGCCTCAGCTAATTATCTTGGGCTCATTGGCCACGAGAAGTTGCTGGAATCATGTACT 655
Query 420 TCTGCATTAGAAAAATATGGTGTCGGTTCTTGTGGTCCTCGTGGATTCTATGGTACAATT 479
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 656 TCTGCATTAGAAAAATATGGGGTCGGTTCTTGTGGGCCTCGTGGATTCTATGGTACAATT 715
Query 480 GATGTCCATCTTGACTGCGAAACCAGAATATCAAAATTTTTGGGTACTCCTGATTCAATC 539
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 716 GATGTCCACCTTGACTGCGAAACCAGAATATCCAAATTTTTGGGTACTCCTGATTCAATC 775
Query 540 CTCTATTCTTATGGACTTTCCACGATGTTCAGCACAATTCCTTGTTTCTGTAAGAAAGGC 599
|| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 776 CTTTACTCTTATGGACTTTCCACAATGTTCAGCACAATTCCTTGTTTCTGTAAGAAAGGC 835
Query 600 GATGTCATTGTTGCTGATGAGGGTGTTCACTGGGGAATACAAAATGGACTTCAGCTTTCA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GATGTCATTGTTGCTGATGAGGGTGTTCACTGGGGAATACAAAATGGACTTCAGCTTTCA 895
Query 660 AGAAGTACAATTGTGTACTTCAAGCACAATGACATGGAATCCCTTCGAAGTACCCTTGAG 719
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 896 AGAAGTACAATTGTGTACTTCAAGCACAATGACATGGAATCCCTTCGAATTACCCTTGAG 955
Query 720 AAAATCATGACAAAGTACAAGCGCTCAAAGAACTTGAGGCGTTATATTGTAGCTGAAGCT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 AAAATCATGACAAAGTACAAGCGCTCAAAGAACTTGAGGCGTTATATTGTAGCTGAAGCT 1015
Query 780 GTATATCAGAATTCTGGTCAAATTGCGCCTCTGGATGAGATTGTAAAACTAAAAGAGAAG 839
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 GTATATCAAAATTCAGGTCAAATTGCGCCTCTGGATGAGATTGTAAAACTAAAAGAGAAG 1075
Query 840 TATCGGTTTCGTGTTATATTGGATGAAAGCAACTCTTTTGGTGTGCTTGGCCGTTCTGGG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TATCGGTTTCGTGTTATATTGGATGAAAGCAACTCTTTTGGTGTGCTTGGCCGTTCTGGG 1135
Query 900 AGAGGTCTTGCAGAGCATCATAGTGTCCCTATTGAGAAGATAGATGTTGTGACTGCTGCA 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 AGAGGTCTTGCAGAGCATCATAGTGTCCCTATTGAGAAGATAGATGTTGTGACTGCTGCA 1195
Query 960 ATGGGCCATGCATTAGCCACAGAAGGTGGATTTTGCACTGGGAATGCCCGCATCATCGAT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 ATGGGCCATGCATTAGCCACAGAAGGTGGATTTTGCACTGGGAATGCCCGCATCATCGAT 1255
Query 1020 TACCAGAGGCTTAGCAGTTCAGGATATGTGTTCTCTGCTTCTTTGCCACCATACCTTGCA 1079
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1256 TACCAGAGACTTAGCAGTTCAGGATATGTGTTCTCTGCTTCTTTACCACCATACCTTGCA 1315
Query 1080 AGTGCTGCTATCACCGCCATTGATGTCATTGATCAAAACCCGGATATGTTAGTTAAGCTG 1139
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1316 AGTGCTGCTATCACCGCCATTGATGTCATTGATCAAAACCCTGATATGTTAGTTAAGCTG 1375
Query 1140 AAGCAAAATATTGCTCTGTTATGGAAAGGATTGTCAGATATCAAGGGGATGTCGTTAACA 1199
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1376 AAGCAAAATGTTGCTCTGTTATGGAAAGGATTGTCAGATATCAAGGGGATGTCATTAACA 1435
Query 1200 AGCAACCGGGAATCGCCTATTGTTTTCTTAAAATTAGAGAAATCTAGCGGTTCAGCTAAA 1259
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 AGCAACCGGGAATCACCTATTGTTTTCTTAAAATTAGAGAAATCTAGCGGTTCAGCTAAA 1495
Query 1260 GACGATTTGCTTCTACTTGAGGAAATGGCTGACCGTGCTCTGAAGGAAGACTCGTTGTTG 1319
|| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1496 GATGATTTGCTTCTACTTGAGAAAATGGCTGACCGTGCTCTGAAGGAAGACTCATTGTTG 1555
Query 1320 GTTGTGAGTTCTAAAAGATCGTTTCTTGATAAATGCCGGTTACCTGTGGGAATCAAACTC 1379
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1556 GTTGTGAGTTCTAAAAGATCATTTCTTGATAAATGCCGGTTACCTGTGGGAATCAAACTC 1615
Query 1380 TACGTTTCAGCGGGACATTCGGAATCCGATCTTCTTAAAGCATCCGAGTCGCTGAAGAGA 1439
||||| ||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 1616 TACGTCTCAGCGGGACATTCGGAATCCGATCTTCTTAAAGCGTCGGAGTCACTGAAGAGA 1675
Query 1440 CTTGCTTCAGAGCTTCTACTCAAGTCTTGAAACACC-AAACTCTTTTT-CTTCA 1491
|||||||||||||||||||||||||| ||||||||| ||||||||||| |||||
Sbjct 1676 CTTGCTTCAGAGCTTCTACTCAAGTCCTGAAACACCGAAACTCTTTTTTCTTCA 1729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73543798425
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5