BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944235
Length=402
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36490.1 | Symbols: ATSFH12, SFH12 | SEC14-like 12 | chr4:17... 387 6e-107
> AT4G36490.1 | Symbols: ATSFH12, SFH12 | SEC14-like 12 | chr4:17221996-17225016
FORWARD LENGTH=1943
Length=1943
Score = 387 bits (209), Expect = 6e-107
Identities = 231/242 (95%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 121 AGTGAACTTCTTGAGTTTCTTGGAGGTTCATGTACCTGTGCTGACAATGGTGGCTGCATG 180
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 941 AGTGAACTTCCTGAGTTTCTTGGAGGTTCATGTACTTGTGCTGACAATGGTGGCTGCATG 1000
Query 181 CGCTCTGACAAAGGCCCATGGAAAAACCCAGAGATCATGAAGAGGGTTCACAATGGTGAT 240
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1001 CGCTCTGACAAAGGCCCATGGAAAAATCCAGAGATCATGAAGAGAGTTCACAATGGTGAT 1060
Query 241 CACAAATGCTCAAAAGGATCCCAAGCTGAAAACTCTGCAGCGAAGACCATCCCTGAGGAA 300
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1061 CACAAATGCTCAAAAGGATCCCAAGCTGAAAACTCTGGAGAGAAGACCATCCCTGAGGAA 1120
Query 301 AATGACTCTACAACAGAGACGGCTCCTGAAGAGGAAAAGGCTTCAACAGAGGTTGAAATT 360
||||||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||
Sbjct 1121 GATGACTCTACAACAGAGCCGGCTTCTGAAGAGGAAAAGGCTTCAAAAGAGGTCGAAATT 1180
Query 361 GT 362
||
Sbjct 1181 GT 1182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19001209122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5