BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944247
Length=1989
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36280.1 | Symbols: | Histidine kinase-, DNA gyrase B-, and... 2025 0.0
AT4G36290.1 | Symbols: CRT1 | compromised recognition of TCV 1 ... 1714 0.0
AT4G36270.1 | Symbols: | ATP binding | chr4:17161024-17165241 ... 1066 0.0
> AT4G36280.1 | Symbols: | Histidine kinase-, DNA gyrase B-, and
HSP90-like ATPase family protein | chr4:17165331-17169375
REVERSE LENGTH=2161
Length=2161
Score = 2025 bits (1096), Expect = 0.0
Identities = 1591/1822 (87%), Gaps = 66/1822 (4%)
Strand=Plus/Plus
Query 156 CAAGTACAATCGCTGATGCTGCGACGGTGGCTCCTCGAGAAACCCTAGAATGCCGGAG-T 214
||||||||||||||| ||||||||| ||||||||||||| ||| ||||||||||||| |
Sbjct 196 CAAGTACAATCGCTGGTGCTGCGACAATGGCTCCTCGAGAGACCTTAGAATGCCGGAGCT 255
Query 215 TTCTGGAAAGCCGGCGAAAACTTTGCGATCCCTAACGGTGTTACCCCAACTGCTTCAGGT 274
|| ||||| || || || |||||| ||| || |||| ||| || || |||||| |||||
Sbjct 256 TT-TGGAAGGCGGGAGATTACTTTGTGATACCGAACGTTGTGACTCCTACTGCTCCAGGT 314
Query 275 ATGGTTGAGCATGCTCGAGTACATCCAAAGTTTCTTCACTCGAATGCTACTTCACACAAA 334
||| |||||||||||||||| ||||| | ||||||||||||||||||||| |||||||||
Sbjct 315 ATGCTTGAGCATGCTCGAGTTCATCCCAGGTTTCTTCACTCGAATGCTACCTCACACAAA 374
Query 335 TGGGCTTTTGGAGCAATCGCCGAACTGCTTGACAATGCTGTTGACGAGATACAAAATGGC 394
|||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 375 TGGGCTTTTGGAGCAATCGCTGAGCTACTTGACAATGCTGTTGACGAGATACAAAATGGT 434
Query 395 GCTACGTTTGTTAAGATTGATAAGATCGATATTGTCAAAGATAATTCTCCAGCTTTAGTT 454
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 435 GCTACGTTTGTTAAGATTGATAAGATCAATATTGTCAAAGATAATTCCCCAGCTTTAGTT 494
Query 455 TTCCAAGATGATGGCGGTGGGATGGATCCTGATGGACTCAGAAAATGCATGAGCTTAGGC 514
|||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct 495 TTCCAAGATGATGGTGGTGGGATGGATCCCGCTGGGCTCAGAAAATGCATGAGCTTAGGC 554
Query 515 TACTCATCAAAGAAGTCTAATACAACAATTGGACAGTATGGAAATGGTTTCAAGACAAGT 574
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 555 TACTCATCAAAGAAGTCTAATACAACGATTGGACAGTATGGAAATGGTTTCAAGACAAGT 614
Query 575 ACCATGAGACTTGGAGCTGATGCTATCGTTTTTAGTCGCTCAAGTCGTGGAGGCAAATCT 634
||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 615 ACCATGAGACTTGGAGCTGATGCTATCGTTTTTAGTCGCTCCACTCGTGGAGGCACATCT 674
Query 635 ACTCAGAGCGTTGGTC-TTCTGTCTTACACGTTCCTCAGAAAAACTAGTCAGGATGATGT 693
|||||||||||||| | ||||||| ||||| ||||| ||||||||| |||||||||||||
Sbjct 675 ACTCAGAGCGTTGG-CATTCTGTCATACACATTCCTTAGAAAAACTGGTCAGGATGATGT 733
Query 694 CATTGTTCCTATGATTGATATTGATATATCCAAGGAGCGACCACAACCAATTATCTATGG 753
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 CACTGTTCCTATGATTGATATTGATATATCCAAGGAGCGACCACAACCAATTATCTATGG 793
Query 754 ATCTCCAGAAGATTGGGCTGCCAACCTTCAAATTCTACTCAAATGGTCTCCGTTTTCTAC 813
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 794 ATCTCCAGAAGATTGGGCTGCCAACCTTGAAATTCTACTCAAATGGTCTCCGTTTTCTAC 853
Query 814 AGAGGATGAACTTTGGCAGCAGTTCGTGGAAATTGGAACACATGGAACAAAAGTAATTAT 873
|||||| ||||||| ||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct 854 AGAGGACGAACTTTTGCAGCAGTTCGAGGACGTTGGAACTCATGGAACAAAAGTAATTAT 913
Query 874 ATACAACTTGTGGCTTAATGATGAAGGAATTTATGAGCTGAGTTTTGACGACGAC-AGTG 932
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
Sbjct 914 ATACAACTTGTGGCTTAATGATGAAGGAATCTATGAGCTGAGTTTTGACGACGACGAG-G 972
Query 933 AGGACATCCGGCTCCAAGATGA-AGGTGTCCATGATGGGAAACGGTTGCCCCCTAAAGTA 991
|||| |||||||||| |||||| || ||| |||| || |||||||||| || |||| ||
Sbjct 973 AGGATATCCGGCTCCGAGATGAGAG-TGTGAATGACGGAAAACGGTTGCACCATAAAATA 1031
Query 992 TTGGAACTGAGATCTCATATATCATACCAATTACGTTACTCTCTGAGGGCTTACGCTTCA 1051
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||
Sbjct 1032 TTGGAACTGAGATCTCATATTTCATACCACTTACGTTATTCTCTGAGGGCTTATGCTTCA 1091
Query 1052 ATGTTATATCTCGAGAAGTTCGAAAATTTCAAAATTATACTACGAGGAATCCCTGTGGAG 1111
|||||||||||| | |||||| |||| |||||||||||| | || |||||||||||||||
Sbjct 1092 ATGTTATATCTCAAAAAGTTCAAAAACTTCAAAATTATAATTCGGGGAATCCCTGTGGAG 1151
Query 1112 CAGTTCAACATTGCTGATGAACTCAGATATTCCA-AGATTATAAAGTACAAGCCCTATAA 1170
||||||||||||||||||| | |||||| |||| ||||||| |||||||||||| |||
Sbjct 1152 CAGTTCAACATTGCTGATGGATTCAGAT-TTCCCGAGATTATTAAGTACAAGCCCCATAC 1210
Query 1171 AGCTACTATGGAACAAGCTACCACTAAAATCAAAGTTGGATTTATAAAGGAGGGGCCTAA 1230
|||||| | |||||||||| ||||| |||||||| |||||||| ||||||||| |||||
Sbjct 1211 AGCTACAACGGAACAAGCTTCCACTGAAATCAAAATTGGATTTGTAAAGGAGGCACCTAA 1270
Query 1231 GCTTGCAGTTTGTGGTTACAATGTTTATCATAAAAACCGTCTCATCCGGG-TA-----AA 1284
||||||| | || |||| |||||| ||||| |||||||||||||||||| | ||
Sbjct 1271 GCTTGCAATCTGCGGTTTCAATGTGTATCACAAAAACCGTCTCATCCGGCCTTTCTGGAA 1330
Query 1285 GA-C-CTGTAGGAGAG-ACTC-ATTAATCAAAATCTGTTCCCCAGGAGTTCTTGAAGCAA 1340
| | || | |||| | |||| | | | | |||| ||||||||||||||||
Sbjct 1331 GGTCACTATGGGAGGGGACTCGAC-AGGCCACGG-TGTTGTG--GGAGTTCTTGAAGCAA 1386
Query 1341 ACTTCATAGAACCAGCCCACGATAAGCAAGATTTTGAGAGGTCGTCTCTATTTCAGCGGC 1400
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1387 ACTTCATAGAACCAGCCCACGATAAGCAAGATTTTGAAAGGTCTTCTCTATTTCAGCGGC 1446
Query 1401 TGGAGGCGAGGTTGAAAAAGATTGTCCAT-GATTACTGGCAGAGCCA-TGTCCAAGTTTT 1458
|||||||||||||||||||||||||| || | ||||||| | ||||| || ||| ||||
Sbjct 1447 TGGAGGCGAGGTTGAAAAAGATTGTCTATAG-TTACTGGTATAGCCACTG-CCACCTTTT 1504
Query 1459 TGGATACAATATTTAT-AAAGTGCCTGCACCTGCTGTTAAGTCGAAAAAGATAGCAATAC 1517
|||||| ||| ||| ||| |||||||| | | ||||||||||||||||||||||
Sbjct 1505 AGGATACCATAAATATCAAA-TGCCTGCA---GAT---AAGTCGAAAAAGATAGCAATAC 1557
Query 1518 GTGATCAACCACCTACTGTTAATACATTCAATCATTTACCTTTGCCTTCTGATAGAATCA 1577
||||||||| |||||| | | |||| |||||| || |||||||||||||||| ||| |
Sbjct 1558 CTGATCAACCTCCTACTATCAGTACAGTCAATCCTTCGCCTTTGCCTTCTGATAAAATTA 1617
Query 1578 GTCAAGGTGGTCCGATAATACGTGAAATCAGTCTTAGTAATGCCACTTCAAGCCGTACAG 1637
|||||||||| || |||||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct 1618 GTCAAGGTGGCCCTATAATACGTGAAATCAATCTTAGTAACGCCACCTCAAGCCGTACAG 1677
Query 1638 TTGCTGTTGCAGCGCCACATTTGAGAAATTCCACGGGTCTAAGAAGTAACTTCCAACCAG 1697
||||| |||| |||||||||||||||||||||| ||| ||||||||||||| ||||| |
Sbjct 1678 TTGCTTTTGCTTCGCCACATTTGAGAAATTCCACTGGTTTAAGAAGTAACTTTCAACCCG 1737
Query 1698 TGCAGCTCAGCCCTCAACCTGCAGCTACCGTAAGTGAAATATCTTCCCAGCTGGATACTG 1757
||||||||| ||| |||||| ||||| ||| | | | || | | | |
Sbjct 1738 TGCAGCTCAACCCACAACCTACAGCTGCCG-A--T-A-----CT-----G--G-A-A--- 1776
Query 1758 AAAACAACCTTGTTGGCATGTCAGCGGATGAGATAAGCGAAGAGAACATGCAACTCTTCA 1817
| |||||| | ||||| |||||||| ||||||| || |||||||| | ||||||||||
Sbjct 1777 A---CAACCTCGATGGCAAGTCAGCGGGTGAGATACGCCAAGAGAACTTACAACTCTTCA 1833
Query 1818 TGAGGTGCGAGGAATATGTAAAGAAAGA-AACAGAAATGGAACAGGCGGT-AAGTAACTT 1875
||||||||||||||||| |||||||||| || |||| |||||| |||| ||| | |||
Sbjct 1834 TGAGGTGCGAGGAATATATAAAGAAAGAGAAT-GAAACAGAACAGACGGTGAAG-AGCTT 1891
Query 1876 AGAAAAGGAACTGGAAGAAACTAAAAGTAAATGTGCACGAC-TTGCACTGCTCGTGGATG 1934
|||||| |||||||||||| ||||||||||||||||| || |||| |||||||||||||
Sbjct 1892 AGAAAAAGAACTGGAAGAATTTAAAAGTAAATGTGCAC-ACCTTGCTCTGCTCGTGGATG 1950
Query 1935 CTAAGAGGAGGGAGATGCAACA 1956
|||||| || ||||||||||||
Sbjct 1951 CTAAGAAGAAGGAGATGCAACA 1972
> AT4G36290.1 | Symbols: CRT1 | compromised recognition of TCV
1 | chr4:17169464-17173215 REVERSE LENGTH=2141
Length=2141
Score = 1714 bits (928), Expect = 0.0
Identities = 1633/1960 (83%), Gaps = 102/1960 (5%)
Strand=Plus/Plus
Query 36 CGAAAAA-TGCAACAGTCTCTGATGTCGTTTATCTCGACAGTGACAGTGACAGTGACGAT 94
||||||| | | |||||| | |||||||| || |||||||||||||||||||||||||
Sbjct 33 CGAAAAATTAC-ACAGTCGCCGATGTCGTAAATATCGACAGTGACAGTGACAGTGACGAC 91
Query 95 G--GA-GTAGGAGGAAGAGG-A-GCTTTTAGAAGCATGGCGTCGCTAATGGAGAATCAGC 149
| | | ||||| || ||| | | || | ||| |||| || ||||| |||||||||
Sbjct 92 GACAACGGAGGAGTAATAGGAATG-GTTCCG-AGCTTGGCATCTCTAATAGAGAATCAGA 149
Query 150 AAGTTCCAAGTACAATCGCTGATGCTGCGACGGTGGCTCCTCGAGAAACCCTAGAATGCC 209
||||| | | ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 150 AAGTT-----T-CGATCGCTGATGCTGCGACGGTGGCTCCTCGAGAAACCCTAGAGTGCC 203
Query 210 GGAGTTTCTGGAAAGCCGGCGAAAACTTTGCGATCCC-T-AACGGTGTTACCCCAACTG- 266
| |||||||||||||||||||||||||||| |||||| | || ||||||| | |||||
Sbjct 204 GAAGTTTCTGGAAAGCCGGCGAAAACTTTGTGATCCCTTCAA--GTGTTACTCTAACTGC 261
Query 267 CTTCAGGTATGGTTGAGCATGCTCGAGTACATCCAAAGTTTCTTCACTCGAATGCTACTT 326
| | ||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 262 CAT-AGGTATGGTTGAGCATGCTCGTGTTCATCCAAAGTTTCTTCACTCGAATGCTACTT 320
Query 327 CACACAAATGGGCTTTTGGAGCAATCGCCGAACTGCTTGACAATGCTGTTGACGAGATAC 386
|||| |||||||||||||||||||||||||| || ||||||||||| ||||| |||||||
Sbjct 321 CACATAAATGGGCTTTTGGAGCAATCGCCGAGCTACTTGACAATGCGGTTGATGAGATAC 380
Query 387 AAAATGGCGCTA-CGTTTGTTAAGATTGATAAGATCGATATTGTCAAAGATAATTCTCCA 445
|||| || |||| || |||| ||||||||||||||| ||||||| ||||||||| | ||
Sbjct 381 AAAACGGTGCTACCG-TTGTCAAGATTGATAAGATCAATATTGTTAAAGATAATACACCT 439
Query 446 GCTTTAGTTTTCCAAGATGATGGCGGTGGGATGGATCCTGAT-GGACTCAGAAAATGCAT 504
|| ||||||||||||||| |||| ||||||||||||||| || ||| |||||||||||||
Sbjct 440 GCCTTAGTTTTCCAAGATAATGGTGGTGGGATGGATCCTAATGGGA-TCAGAAAATGCAT 498
Query 505 GAGCTTAGGCTACTCATCAAAGAAGTCTAATACAACAATTGGACAGTATGGAAATGGTTT 564
||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 499 GAGCTTAGGCTACTCGTCAAAGAAGTCTAATACGACAATTGGACAATATGGAAATGGTTT 558
Query 565 CAAGACAAGTACCATGAGACTTGGAGCTGATGCTATCGTTTTTAGTCGCTCAAGTCGTGG 624
|||||||||||| |||||||||||||||||||| || |||||||||||||||| ||||||
Sbjct 559 CAAGACAAGTACAATGAGACTTGGAGCTGATGCCATGGTTTTTAGTCGCTCAACTCGTGG 618
Query 625 AGGCAAATCTACTCAGAGCGTTGGTCTTCTGTCTTACACGTTCCTCAGAAAAACTAGTCA 684
|||||||||||| |||||| ||||||||||||| || || ||||| || |||||| ||||
Sbjct 619 AGGCAAATCTACACAGAGCATTGGTCTTCTGTCCTATACATTCCTTAGGAAAACTGGTCA 678
Query 685 GGATGATGTCATTGTTCCTATGATTGATATT-GATATATCCAAG-GAGCGACCACAACCA 742
||||||||| || ||||||||||||||| || ||||||||| || || | || ||||||
Sbjct 679 GGATGATGTGATCGTTCCTATGATTGAT-TTCGATATATCC-AGTGATAGCCCCCAACCA 736
Query 743 ATTATCTATGGATCTCCAGAAGATTGGGCTGCCAACCTTCAA-ATTCTACTCAAATGGTC 801
||||| ||||| ||||| | ||||||| || |||||||| || ||||| |||||||||||
Sbjct 737 ATTATTTATGGGTCTCCCGGAGATTGGTCTACCAACCTT-AACATTCTTCTCAAATGGTC 795
Query 802 TCCGTTTTCTACAGA-GGAT-GAACTTTGGCAGCAGTTCGTGGAAATTGGAACACATGGA 859
|||||||| ||| | || | ||||||| ||||||||||| ||| |||||||||||||||
Sbjct 796 CCCGTTTTCAACA-ATGG-TCGAACTTTTGCAGCAGTTCGAGGATATTGGAACACATGGA 853
Query 860 ACAAAAGTAATTATATACAACTTGTGGCTTAATGATGAAGGAATTTATGAGCTGAGTTTT 919
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 854 ACAAAAGTAATTATATACAACTTGTGGCTTAATGATGAAGGAATCTATGAGCTGAGTTTT 913
Query 920 GACGACGAC-AGTGAGGACATCCGGCTCCAAGATGAAGGTGTCCATGATGGGAAACGGTT 978
|||||||| | || ||| || ||||||| ||||||| || ||| || |||||||||||
Sbjct 914 GACGACGATGA-TGTGGATATACGGCTCCGAGATGAAAATGCCCAGGACGGGAAACGGTT 972
Query 979 GCCCCCTAAAGTATTGGAACTGAGATCTCATATATCATACCAAT-TACGTTACTCTCTGA 1037
|| | ||||| ||||||| | ||||||||||| || |||| | | || | ||||| |
Sbjct 973 GCACGCTAAAACATTGGAAGTAAGATCTCATATTTCGTACCGCTAT-CGACATTCTCTAA 1031
Query 1038 GGGCTTACGCTTCAATGTTATATCTCGAGAAGTTCGAAAATTTCAAAATTATACTACGAG 1097
|||||||| ||| |||||||||||| | |||||| |||| ||||||||||| || || |
Sbjct 1032 GGGCTTACATTTCCATGTTATATCTCAAAAAGTTCAAAAACTTCAAAATTATTCTTCGGG 1091
Query 1098 GAATCCCTGTGGAGCAGTTCAACATTGCTGATGAACTCAGATATTCCA-AGATTATAAAG 1156
|| || |||||| ||| |||||||||||||||||| ||||| || || ||| |||| |
Sbjct 1092 GAGTCTCTGTGGCGCAATTCAACATTGCTGATGAATTCAGACAT-CCTGAGACAATAATG 1150
Query 1157 TACAAGCCCTATAA-AGCTACTA-TGGAACAAGCTACCACTAAAATCAAAGTTGGATTTA 1214
||||| ||| | | |||| | | |||| | ||| ||||| ||| ||||||||||| |
Sbjct 1151 TACAAACCCCA-AGCAGCTGC-AGTGGATTATGCTGCCACTGGAATTAAAGTTGGATTCA 1208
Query 1215 TAAAGGAGGGGCCTAAGCTTGCAGTTTGTGGTTACAATGTTTATCATAAAAACCGTCTCA 1274
| ||||||| ||||| ||| || ||||||||| |||||| ||||| |||||||||||||
Sbjct 1209 TCAAGGAGGCCCCTAAACTTCCAATTTGTGGTTTCAATGTCTATCACAAAAACCGTCTCA 1268
Query 1275 TCCGGGTA------AAGACC-TG-TAGGAGAGACTCATT-A-AT-CAAAATCTGTTCCCC 1323
||||| | ||| | | | ||| || ||| | | ||| ||||
Sbjct 1269 TCCGGCCATTCTGGAAGGTCGTTCT-GGA-AGGGTCAACGAGAGGCAATGG-TGTTATG- 1324
Query 1324 AGGAGTTCTTGAAGCAAACTTCATAGAACCAGCCCACGATAAGCAAGATTTTGAGAGGTC 1383
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1325 -GGAGTTCTTGAGGCAAACTTCATAGAACCAGCCCACGACAAGCAAGATTTTGAGAGGTC 1383
Query 1384 GTCTCTATTTCAGCGGCTGGAGGCGAGGTTGAAAAAGATTGTC-CATGATTACTGGCAGA 1442
|||||||||| |||||||||||||||| |||||| ||| | | |||||||||||| |
Sbjct 1384 TTCTCTATTTCTGCGGCTGGAGGCGAGGCTGAAAAGGATAACCTC-TGATTACTGGCAAA 1442
Query 1443 GCCA-TGTC-CAAGTTTTTGGATAC-AATATTTAT-AAAGTGCCTGCACCTGCTGTTAAG 1498
|| |||| || |||| |||||| || | | | ||| | |||||| | | |||
Sbjct 1443 ATCACTGTCACA--TTTTCGGATACCAA-ACTGCTCAAA-TCCCTGCA---GAT---AAG 1492
Query 1499 TCGAAAAAGATAGCAATACGTGATCAACCACCTACTGTTAATACATTCAATCATTTACCT 1558
||||||| || || ||||| ||||||||| |||||||| ||||||| ||||| || |||
Sbjct 1493 TCGAAAAGGACAGTAATACCTGATCAACCGCCTACTGTCAATACATACAATCCTTCGCCT 1552
Query 1559 TTGCCTTCTGATAGAATCAGTCAAGGTGGTCCGATAATACGTGAAATCAGTCTTAGTAAT 1618
||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||
Sbjct 1553 TTGCCTTCTGATAGAATCAGTCATGGTGGTCCTATAATACGTGAAATCAATCTTAGTAAC 1612
Query 1619 GCCACTTCAAGCCGTACAGTTGCTGTTGCAGCGCCACATTTGAGAAATTCCACGGGTCTA 1678
|||||||||||||| |||| ||||||||| ||||||||||||||||||| ||| ||| ||
Sbjct 1613 GCCACTTCAAGCCGAACAGCTGCTGTTGCCGCGCCACATTTGAGAAATTACACAGGTTTA 1672
Query 1679 AGAAGTAACTTCCAACCAGTGCAGCTCAGCCCTCAACCTGCAGCTACCGTAAGTGAAATA 1738
|||| |||||||||||| |||||||||| ||| ||||| | || | | |
Sbjct 1673 AGAAATAACTTCCAACCCGTGCAGCTCAACCCACAACCA-C--CTGC---A-G------- 1718
Query 1739 TCTTCCCAGCTGGATACTGAAAACAACCTTGTTGGCATGTCAGCGGATGAGATAAGCGAA 1798
|| || | |||||| ||||||||| ||||||| || ||||| ||||||| |||||
Sbjct 1719 -CTG----GC-G-ATACTGGAAACAACCTCGTTGGCAAGTTAGCGGCTGAGATACGCGAA 1771
Query 1799 GAGAACATGCAACTCTTCATGAGGTGCGAGGAATATGTAAAGAAAGA-AACAGAAATGGA 1857
|||||| | |||||||||||||||||||||||||||||||||||||| || ||| | ||
Sbjct 1772 GAGAACTTACAACTCTTCATGAGGTGCGAGGAATATGTAAAGAAAGAGAAT-GAAGTAGA 1830
Query 1858 ACAGGCGGTAA-GTAACTTAGAAAAGGAACTGGAAGAAACTAAAAGTAAATGTGCACGAC 1916
|||| |||||| | | ||||||||| ||||||||||||| ||||||||||||||||| ||
Sbjct 1831 ACAGACGGTAAAG-AGCTTAGAAAAAGAACTGGAAGAAATTAAAAGTAAATGTGCACAAC 1889
Query 1917 TTGCACTGCTCGTGGATGCTAAGAGGAGGGAGATGCAACA 1956
|||| ||||| ||||||||||||| || ||||||||||||
Sbjct 1890 TTGCTCTGCTTGTGGATGCTAAGAAGAAGGAGATGCAACA 1929
> AT4G36270.1 | Symbols: | ATP binding | chr4:17161024-17165241
REVERSE LENGTH=2163
Length=2163
Score = 1066 bits (577), Expect = 0.0
Identities = 774/864 (90%), Gaps = 34/864 (4%)
Strand=Plus/Plus
Query 1 TTCGATTTCACCGTCGCCGGTAATGGCTCCGAAGTCGAAAAATGCAACAGTCTCTGATGT 60
|||||||| |||||||||||||||||||||| ||||||||||||| |||||||| |||
Sbjct 87 TTCGATTTTACCGTCGCCGGTAATGGCTCCGGAGTCGAAAAATGCGGGAGTCTCTGTTGT 146
Query 61 CGTTTATCTCGACAGTGACAGTGACA--G----TGACGATGGAGTAGGAGGAAGAGGAGC 114
|||| ||||||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct 147 CGTTAATCTCGACAGTGACAGTGACAGTGACAATGACGACGGAGTAGGAGGAAGAGGAGC 206
Query 115 TTTTAGAAGCATGGCGTCGCTAATGGAGAATCAGCAAGTTCCAAGTAC-AATCGCTGATG 173
|||| ||||||||||||| |||||||| || || |||||||||||||| | | |||||
Sbjct 207 TTTTCGAAGCATGGCGTCCCTAATGGACAAACATCAAGTTCCAAGTACGACT-GCTGA-- 263
Query 174 CTGCGACGGTGGCTCCTCGAGAAACCCTAGAATGCCGGAG-TTTCTGGAAAGCCGGCGAA 232
| |||||||| ||||||||||||| |||||| |||||||| ||| ||||| ||||| |||
Sbjct 264 C-GCGACGGTTGCTCCTCGAGAAAACCTAGAGTGCCGGAGCTTT-TGGAAGGCCGGAGAA 321
Query 233 AACTTTGCGATCCCTAACGGTGTTAC---CCCAACTGCTTCAGGTATGGTTGAGCATGCT 289
||||| | |||||||| ||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 322 AACTTCGTGATCCCTACCGGTGTTACTAATCCAGCTGCTCCAGGTATGGTTGAGCATGCT 381
Query 290 CGAGTACATCCAAAGTTTCTTCACTCGAATGCTACTTCACACAAATGGGCTTTTGGAGCA 349
|| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 382 CGTGTTCATCCAAAGTTTCTTCACTCGAATGCTACTTCACACAAATAGGCTTTTGGAGCA 441
Query 350 ATCGCCGAACTGCTTGACAATGCTGTTGACGAGATACAAAATGGCGCTACGTTTGTTAAG 409
|| ||||| || ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 442 ATAGCCGAGCTAATTGACAATGCTGTTGACGAGATACAAAATGGTGCTACGTTTGTTAAG 501
Query 410 ATTGATAAGATCGATATTGTCAAAGATAATTCTCCAGCTTTAGTTTTCCAAGATGATGGC 469
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 502 ATTGATAAGATCAATATTGTCAAAGATAATTCCCCAGCTTTAGTTTTCCAAGATGATGGC 561
Query 470 GGTGGGATGGATCCTGATGGACTCAGAAAATGCATGAGCTTAGGCTACTCATCAAAGAAG 529
||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 562 GGTGGAATGGATCCCGATGGGCTCAGAAAATGCATGAGCTTAGGCTACTCATCAAAGAAG 621
Query 530 TCTAATACAACAATTGGACAGTATGGAAATGGTTTCAAGACAAGTACCATGAGACTTGGA 589
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 622 TCTAATACGACGATTGGACAGTATGGAAATGGTTTCAAGACAAGTACCATGAGACTTGGA 681
Query 590 GCTGATGCTATCGTTTTTAGTCGCTCAAGTCGTGGAGGCAAATCTACTCAGAGCGTTGGT 649
||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 682 GCTGATGATATTGTTTTTACTCGCTCAACTCGTGGAGGCAAATCTACTCAGAGCGTTGGC 741
Query 650 CTTCTGTCTTACACGTTCCTCAGAAAAACTAGTCAGGATGATGTCATTGTTCCTATGAT- 708
|||||||| ||||| ||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 742 CTTCTGTCATACACATTCCTCAGAAAAACTGGTCAGGATGATGTCGTTGTTCCTATGATC 801
Query 709 ---T--G-A-T--A--TTGATAT--AT-C--C-AAGGAGCGACCACAACCAATTATCTAT 751
| | | | | ||||||| || | | |||||||||||||||||||||||||||
Sbjct 802 CGATATGCAATGCAGATTGATATTGATACATCCAAGGAGCGACCACAACCAATTATCTAT 861
Query 752 GGATCTCCAGAAGATTGGGCTGCCAACCTTCAAATTCTACTCAAATGGTCTCCGTTTTCT 811
|||||| |||||||||||||||||| |||| ||||| ||||||| |||||||||||||||
Sbjct 862 GGATCTGCAGAAGATTGGGCTGCCAGCCTTGAAATTATACTCAAGTGGTCTCCGTTTTCT 921
Query 812 ACAGAGGATGAACTTTGGCAGCAG 835
||||||| |||||||||||||||
Sbjct 922 ACAGAGGGCGAACTTTGGCAGCAG 945
Score = 453 bits (245), Expect = 3e-126
Identities = 479/585 (82%), Gaps = 43/585 (7%)
Strand=Plus/Plus
Query 1038 GGGCTTACGCTTCAATGTTATATCTCGAGAA-GTTCGAA-AATTTCAAAATTATACTACG 1095
||||||| |||||||||||||||||| | || |||| || ||||||||||||||||| ||
Sbjct 1130 GGGCTTATGCTTCAATGTTATATCTC-AAAAGGTTC-AATAATTTCAAAATTATACTTCG 1187
Query 1096 AGGAATCCCTGTGGAGCAGTTCAACATTGCTGATGAACTCAGATATTCCA-AGATTATAA 1154
|||||||||||||||||||||||||||||||||||| | |||| | || ||| ||| |
Sbjct 1188 TGGAATCCCTGTGGAGCAGTTCAACATTGCTGATGAATTAAGAT-TACCTGAGACTATTA 1246
Query 1155 AGTACAAGCCCTATA-AAGCTACTATGGAACAAGCTACCACTAAAATCAAAGTTGGATTT 1213
||||||| ||| ||| || | | | |||| ||||| ||||| |||||||||||||||||
Sbjct 1247 AGTACAATCCCCATACAA-CAA--A-GGAAAAAGCTCCCACTGAAATCAAAGTTGGATTT 1302
Query 1214 ATAAAGGAGGGGCCTAAGCTTGCAGTTTGTGGTTACAATGTTTATCATAAAAACCGTCTC 1273
|||||||||| ||||||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct 1303 ATAAAGGAGGCGCCTAAGCTTGCAGTTTGTGGTTTCAATGTCTATCACAAAAACCGTCTC 1362
Query 1274 ATCCGGG-TA-----AAGA-C-CTGTAGGAGAG-ACTCATTA-AT-CAAAATCTGTTCCC 1322
|||||| | ||| | || | |||| | | | | | || ||||
Sbjct 1363 ATCCGGCCTTTCTGGAAGGTCACTATGGGAGGGGAA--AGGAGAGGCAGTGG-TGTTGTG 1419
Query 1323 CAGGAGTTCTTGAAGCAAACTTCATAGAACCAGCCCACGATAAGCAAGATTTTGAGAGGT 1382
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1420 --GGAGTTCTTGAAGCAAACTTTATAGAACCGGCCCACGATAAGCAAGATTTTGAGAGGT 1477
Query 1383 CGTCTCTATTTCAGCGGCTGGAGGCGAGGTTGAAAAAGATTGTC-CATGATTACTGGCAG 1441
| ||||||||||||||| ||||||| ||| |||||||||||||| | | |||||||| |
Sbjct 1478 CTTCTCTATTTCAGCGGTTGGAGGCAAGGCTGAAAAAGATTGTCTC-TAATTACTGGAAT 1536
Query 1442 AGC-CA-TGTCCAAGTTTTTGGATACAATATTTATA-AAGTGCCTGCACCTGCTGTTAAG 1498
| | || || ||| || || |||||| || |||| || |||||||| | | |||
Sbjct 1537 A-CACACTG-CCACGTATTCGGATACTGTACTTATGGAA-TGCCTGCA---GAT---AAG 1587
Query 1499 TCGAAAAAGATAGCAATACGTGATCAACCACCTACTGTTAATACATTCAATCATTTACCT 1558
||||||| ||||||||||| ||||||||| |||||||| ||||||||||||| || |||
Sbjct 1588 TCGAAAAGGATAGCAATACCTGATCAACCGCCTACTGTCAATACATTCAATCCCTTGCCT 1647
Query 1559 TTGCCTTCTGATAGAA-TCAGTCAAGGTGGTCCGATAATACGTGA 1602
|||||||||||| ||| | ||||||||||||| ||||||||||||
Sbjct 1648 TTGCCTTCTGAT-GAAATTAGTCAAGGTGGTCAGATAATACGTGA 1691
Score = 320 bits (173), Expect = 3e-86
Identities = 195/206 (95%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 1751 GATACTGAAAACAACCTTGTTGGCATGTCAGCGGATGAGATAAGCGAAGAGAACATGCAA 1810
||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||| |||
Sbjct 1816 GATACTGAAAACAACCTCGTTGGCAAGTCAGCGCATGAGATAAGCGAAGAGAACATACAA 1875
Query 1811 CTCTTCATGAGGTGCGAGGAATATGTAAAGAAAGAAACAGAAATGGAACAGGCGGTAAGT 1870
||||||||||||||||||||||||||||||||||| || ||| |||||||| ||||||||
Sbjct 1876 CTCTTCATGAGGTGCGAGGAATATGTAAAGAAAGAGACTGAACTGGAACAGACGGTAAGT 1935
Query 1871 AACTTAGAAAAGGAACTGGAAGAAACTAAAAGTAAATGTGCACGACTTGCACTGCTCGTG 1930
||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1936 AACTTAGCAAAGGAACTGGAAGAAACTAAAAGTAAATGTGCACGACTTGCATTACTCGTG 1995
Query 1931 GATGCTAAGAGGAGGGAGATGCAACA 1956
||||||||||||||||||||||||||
Sbjct 1996 GATGCTAAGAGGAGGGAGATGCAACA 2021
Score = 215 bits (116), Expect = 1e-54
Identities = 128/134 (96%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 1513 AATACGTGATCAACCACCTACTGTTAATACATTCAATCATTTACCTTTGCCTTCTGATAG 1572
||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1683 AATACGTGATCAACCGCCTACTGTTAATACATTCAATCCTTTACCTTTGCCTTCTGATAG 1742
Query 1573 AATCAGTCAAGGTGGTCCGATAATACGTGAAATCAGTCTTAGTAATGCCACTTCAAGCCG 1632
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1743 AGTCAGTCAAGGTGGTCCGATAATACGTGAAATCAGTCTTAGTAACGCCACTTCAAGCCG 1802
Query 1633 TACAGTTGCTGTTG 1646
|| || ||||||||
Sbjct 1803 TATAGCTGCTGTTG 1816
Score = 189 bits (102), Expect = 9e-47
Identities = 130/144 (90%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 833 CAGTTCGTGGAAATTGGAACACATGGAACAAAAGTAATTATATACAACTTGTGGCTTAAT 892
||| ||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 988 CAGCTCGAGGATATTGGAACTCATGGAACAAAAGTAATTATATACAACTTGTGGCTTAAT 1047
Query 893 GATGAAGGAATTTATGAGCTGAGTTTTGACGACGACAGTGAGGACATCCGGCTCCAAGAT 952
||||||||||| || |||||||||||| ||||||||| |||||||||||| |||| ||||
Sbjct 1048 GATGAAGGAATCTACGAGCTGAGTTTTCACGACGACAATGAGGACATCCGACTCCGAGAT 1107
Query 953 GAAGGTGTCCATGATGGGAAACGG 976
||| |||||||||| | ||||||
Sbjct 1108 GAAAGTGTCCATGACAGTAAACGG 1131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98543669835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5