BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944272

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G36040.1 | Symbols:  | Chaperone DnaJ-domain superfamily pro...   800    0.0  


> AT4G36040.1 | Symbols:  | Chaperone DnaJ-domain superfamily protein 
| chr4:17049171-17050274 REVERSE LENGTH=1104
Length=1104

 Score =  800 bits (433),  Expect = 0.0
 Identities = 496/526 (94%), Gaps = 5/526 (1%)
 Strand=Plus/Plus

Query  2    AACGTTTCATATAGCAACGATGctttcttcatctccaacttcctttgctcatccatttct  61
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  63   AACGTTTCATATAGCAACGATGCTTTCTTCATCTCCAACTTCCTTTACTCATCCATTTCT  122

Query  62   ctcttcatctccgcctctctctccgatatctccgccgtctcGCACGGCTCGGATCCCGCC  121
            |||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct  123  CTCTTCTTCTCCGCCTCTATCTCCGATATCTCCGCCGTCTCGCACGGCTCGGATCTCTCC  182

Query  122  ACCTCTCGTCTCCGCCTCTTGCTCTTACACTTGCGCGGAGGATTCGCCGAGATTGCATCA  181
            |||||||||||||||||||||||| ||||| | | |||| |||||||||||| |||||||
Sbjct  183  ACCTCTCGTCTCCGCCTCTTGCTCATACACCTACACGGAAGATTCGCCGAGACTGCATCA  242

Query  182  GATCCCGCGGCGGTTGACGACGGCGCCAGCTTCGCTTTACGA-GATTCTTGAGGTTCCTT  240
            |||||||||||| |||||||||| |||||||||||||||||| | |||||||||||||||
Sbjct  243  GATCCCGCGGCGATTGACGACGGTGCCAGCTTCGCTTTACGATG-TTCTTGAGGTTCCTT  301

Query  241  TAGGAGCGACGAGCCAAGATATCAAATCGGCTTACCGGAGATTAGCCAGGATCTGCCATC  300
            |||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct  302  TAGGCGCGACGAGTCAGGATATCAAATCGGCTTACCGGAGATTAGCCAGGATCTGCCATC  361

Query  301  CAGACGTGGCGGGAACTGAGCGGACTTCTTC---ATCGGCGGATGAATTCATGAAGATCC  357
            ||||||||||||||||||| |||||||||||   ||||||||||||||||||||||||||
Sbjct  362  CAGACGTGGCGGGAACTGATCGGACTTCTTCTTCATCGGCGGATGAATTCATGAAGATCC  421

Query  358  ACGCCGCTTACTGTACGCTTTCGGATCCTGAGAAACGCTCTGTTTATGATCGGAGGATGT  417
            | |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct  422  ATGCCGCTTACTGTACGCTTTCTGATCCTGAGAAACGCTCCGTTTATGATCGGAGGATGT  481

Query  418  TGCGACGGAGCCGTCCTTTGACCGTCGGTACCTCCGGGTTGGGAAGTTACGTCGGACGGA  477
            |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct  482  TGCGACGGAGCCGTCCTTTGACCGTCGGAACCTCCGGGTTGGGAAGCTACGTCGGACGGA  541

Query  478  ACTGGGAAACCGATCAGTGCTGGTAGTGAGTTGACTCGGTGAACGA  523
            ||||||||||||||||||| |||||||||||| ||||||||| |||
Sbjct  542  ACTGGGAAACCGATCAGTGTTGGTAGTGAGTTAACTCGGTGACCGA  587



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25016605206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5