BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944275
Length=949
Score E
Sequences producing significant alignments: (Bits) Value
AT4G36010.1 | Symbols: | Pathogenesis-related thaumatin superf... 1426 0.0
AT2G17860.1 | Symbols: | Pathogenesis-related thaumatin superf... 433 2e-120
> AT4G36010.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr4:17039192-17041141 REVERSE LENGTH=1351
Length=1351
Score = 1426 bits (772), Expect = 0.0
Identities = 892/950 (94%), Gaps = 7/950 (1%)
Strand=Plus/Plus
Query 1 TCTGGTGACTCTCTGCTCTAATGGGTCAATTTCAAGTTTCTTTCTTTCTTCTTCTAATTC 60
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 146 TCTGGTGACTCTCTGCTCTAATGGGTCAATCTCAAGTTTCTCTCTTTCTTCTTCTAATTC 205
Query 61 TTGTTTTAATCTATGGAGTTTCCTCCACCACTTTCACCATCGTTAACCAGTGCAGCTACA 120
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 206 TTGTTTTCATCTATGGAGTTTCCTCCACCACTTTCACCATCGTTAACCAGTGTAGCTACA 265
Query 121 CCGTCTGGCCTGGACTTCTCTCCGGCGCCGGAACCTCTCCTTTACCAACAACCGGATTCT 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 266 CCGTCTGGCCTGGACTTCTCTCCGGCGCCGGAACCTCTCCTTTACCTACAACCGGATTCT 325
Query 181 CCTTAAACCCGACCGAGACACGTGTCATCCCAATCCCCGCCGCCTGGTCCGGCCGTATAT 240
|||||||||| ||||||||||| || ||||| |||||||| || |||||||| ||||| |
Sbjct 326 CCTTAAACCCTACCGAGACACGAGTTATCCCGATCCCCGCAGCTTGGTCCGGTCGTATTT 385
Query 241 GGGGTCGTACTCTCTGCACACAAGACGCAACCACCGGGAA-ATTCACTTGCATCACCGGA 299
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 386 GGGGTCGTACTCTCTGCACACAAGACGCAACCACC-GGAAGATTCACTTGCATCACCGGG 444
Query 300 GACTGTGGTTCTTCCACCGTAGAATGCTCCGGATCCGGGGCTGCACCGCCTGCGACACTC 359
|||||||||||||||||||||||||||||||||||||| |||||||| || || ||||||
Sbjct 445 GACTGTGGTTCTTCCACCGTAGAATGCTCCGGATCCGGTGCTGCACCTCCGGCTACACTC 504
Query 360 GCAGAATTCACCTTGAACGGAGCCAATGGCCTCGATTTCTACGACGTCAGTCTCGTCGAC 419
|| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 505 GCTGAATTCACCTTAAACGGAGCTAATGGTCTCGATTTCTACGACGTCAGTCTCGTCGAC 564
Query 420 GGTTACAACATCCCGATGACCATCGTCCCTCAGGGAGGCGGAGATGCAGGAGGCGTCGCC 479
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 565 GGTTACAACATCCCGATGACCATCGTCCCTCAGGGTGGAGGAGATGCCGGAGGCGTCGCC 624
Query 480 GGGAACTGCACGACCACCGGCTGCGTTGCGGAGCTTAACGGTCCGTGTCCTGCTCAGCTG 539
|| ||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 625 GGAAACTGTACGACAACCGGCTGCGTTGCGGAGCTCAACGGTCCATGTCCTGCTCAGCTG 684
Query 540 AAAGTGGCGACGACGGGAACTGAAGGAGTAGCTTGCAAAAGCGCGTGTGAGGCGTTTGGG 599
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 685 AAAGTGGCGACGACGGGAGCTGAAGGAGTAGCTTGCAAAAGCGCGTGTGAAGCGTTTGGA 744
Query 600 ACGCCGGAGTATTGCTGTAGCGGCGCGTTTGGAACGCCGGACACGTGTAAGCCGAGCGAG 659
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 745 ACGCCGGAGTACTGCTGTAGCGGCGCGTTTGGAACGCCGGACACGTGTAAGCCAAGCGAG 804
Query 660 TACTCGCAGTTCTTCAAAAACGCGTGTCCGAGAGCTTATAGTTACGCTTACGACGACGGA 719
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 805 TACTCACAGTTTTTCAAAAACGCGTGCCCGAGAGCTTATAGTTACGCTTACGACGACGGA 864
Query 720 ACTAGTACCTTCACTTGTGGCGGAGCTGATTACGTCATCACTTTCTGTCCTTCTCCTAAC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 865 ACTAGTACCTTCACTTGTGGCGGAGCTGATTACGTCATCACTTTCTGTCCTTCTCCTAAC 924
Query 780 CCAAGTGTAAAGAGTGCAACGAAGGGACTCCAACCCGAAGCTGTTAGCTACTCTACGGCA 839
|||||||| |||||||||||||||||| ||||||||| ||||||||||||||||| ||||
Sbjct 925 CCAAGTGTGAAGAGTGCAACGAAGGGAGTCCAACCCGTAGCTGTTAGCTACTCTAAGGCA 984
Query 840 TCTCCAAACGCGTCGCCAACTATCTCTGCCGTGTTTTCGATTGGCGTTTTGGCTTTCGCC 899
||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||
Sbjct 985 TCTCCAAACGCGTCGCCAACTCTTTCTGCCGTGTTTTCGATTGGCGTTTTGGCTGTCGC- 1043
Query 900 GCGTCTTGGGCGATGCAACTTGTTTGGTGATCCCTGTACGGC-GACGTTT 948
| ||||||| |||||||| |||| ||||| | |||||||| | |||||
Sbjct 1044 G--TCTTGGGTGATGCAACGCGTTTTGTGATTCATGTACGGCTG-CGTTT 1090
> AT2G17860.1 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr2:7762257-7763018 REVERSE LENGTH=762
Length=762
Score = 433 bits (234), Expect = 2e-120
Identities = 577/736 (78%), Gaps = 49/736 (7%)
Strand=Plus/Plus
Query 64 TTTTAATCTATGGAGTTTCCTCCACCACTTTCACCATCGTTAACCAGTGCAGCTACACCG 123
|||| ||| |||| | |||||||||||| |||||||||||||||||||| | ||||||||
Sbjct 44 TTTTCATCAATGGTGGTTCCTCCACCACGTTCACCATCGTTAACCAGTGTAACTACACCG 103
Query 124 TCTGGCCTGGACTTCTCTCCGGCGCCGGAACCTCTCCTTTACCAACAACCGGATTCTCCT 183
||||||| |||||||||||||||||||| ||| |||| ||||| || || || ||||||
Sbjct 104 TCTGGCCGGGACTTCTCTCCGGCGCCGGCACCGCTCCATTACCCACCACTGGTTTCTCCC 163
Query 184 TAAAC-CCGACCGAGACACGTGTCATC-CCAATCCCCGCCGCCTGGTCCGGCCGTATATG 241
| ||| || ||| |||| ||||| || || |||||||| ||||||||||| |||||
Sbjct 164 TCAACTCC-TTTGAGTCACGACTCATCTCC-ATACCCGCCGCTTGGTCCGGCCGCATATG 221
Query 242 GGGTCGTACTCTCTGC-ACACAAGACGCAACCACCGGGAA-ATTCACTTGCATCACCGGA 299
||| || || |||||| || ||| ||| || |||| |||| |||||||||| |||||||
Sbjct 222 GGGACGCACGCTCTGCAAC-CAAAACGAAATCACC-GGAATATTCACTTGCGTCACCGGC 279
Query 300 GACTGTGGTTC-TTCCACCGTAGAATGCTCCGGATCCGGGGC--TGCACCGCCTGCGACA 356
||||| || || | ||| | |||||||| || | || || | | || || || |||
Sbjct 280 GACTGCGGCTCATCCCA-AATCGAATGCTCTGGCGCAGGAGCAAT-C-CCTCCAGCTACA 336
Query 357 CTCGCAGAATTCAC-CTTGAACGGAGCC-AATGGCCTCGATTTCTACGACGTCAGTCTCG 414
|| || |||||||| | | ||||| ||| || || |||||||||||||| || ||||
Sbjct 337 CTAGCCGAATTCACAC-TCAACGGCGCCGAA-AATCTAGATTTCTACGACGTTAGCCTCG 394
Query 415 TCGACGGTTACAACATCCCGATGACCATCGTCCCTCAGGGAGGCGGAG--ATGCAGGAGG 472
|||| |||||||||||||| ||||| ||||| ||| | ||||||| || | |||
Sbjct 395 TCGATGGTTACAACATCCCAATGACGATCGTTCCTTA---CGGCGGAGCTAT-C-GGA-- 447
Query 473 CGTCGCCGGGAACTG-CACGACCACCGGCTGCGTTGCGGAGCTTAACGGTC-CGTGTCCT 530
|| ||| || || ||| | || || |||| ||||| || ||||| | |||||
Sbjct 448 -GT---CGGTAAGTGTAACG-CAACGGGTTGCGCGGCGGATCTCAACGG-CTTATGTCCG 501
Query 531 GCTCAGCTGAAAGT---GG-CG-A-CGACGGGAACTGAAGGAGTAGCTTGCAAAAGCGCG 584
| ||||||||||| || | | || | ||||| | | || || ||||| |||||
Sbjct 502 GAGCAGCTGAAAGTAACGGTTGAAGCGGCTGGAACGGGTGCTGTGGCGTGCAAGAGCGCT 561
Query 585 TGTGAGGCGTTTGGGACGCCGGAGTATTGCTGTAGCGGCGCGTTTGGAACGCCGGACACG 644
|||||||||||||| |||||||||| ||| |||| |||||||||||||||||||||||||
Sbjct 562 TGTGAGGCGTTTGGAACGCCGGAGTTTTGTTGTAACGGCGCGTTTGGAACGCCGGACACG 621
Query 645 TGTAAGCCGAGCGAGTACTC-GCAGTTCTTCAA-AAACGCGTGTCCGA-GAGCTTATAGT 701
||| ||||||| |||||||| | ||||| || ||| | ||||||| | |||||||||
Sbjct 622 TGTCAGCCGAGTGAGTACTCTG-TTTTCTTTAAGAAA-ACTTGTCCGACG-GCTTATAGT 678
Query 702 TACGCTTACGACGACGGAACTAGTACCTTCACTTG-TGGCGGAGCTGATTACGTCATCAC 760
|||||||| |||||||| || || || || ||||| | ||| |||||||||||||||||
Sbjct 679 TACGCTTATGACGACGGCACAAGCACTTTTACTTGCT-CCGGTGCTGATTACGTCATCAC 737
Query 761 TTTCTGTCCTTCTCCT 776
||||||||||||||||
Sbjct 738 TTTCTGTCCTTCTCCT 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46416351828
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5