BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg944293 Length=1375 Score E Sequences producing significant alignments: (Bits) Value AT4G35850.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2239 0.0 > AT4G35850.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr4:16983525-16986967 FORWARD LENGTH=1734 Length=1734 Score = 2239 bits (1212), Expect = 0.0 Identities = 1319/1371 (96%), Gaps = 5/1371 (0%) Strand=Plus/Plus Query 10 TCACGTGAGCTATGAAGTTCCTCATGCAATCCATTTCTGGTAGGAATCGATCTCTGGTTC 69 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 103 TCACGTGAGCTATGAAGTTCCTCATGCAATCCATTTCTGGGAGGAATCGATCTCTGGTTC 162 Query 70 GAGCTCTAGTTAGTCGGCGTTACTTCGCTTCATCGCCGGAGGAAATCGCAAAGAAAAATT 129 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 163 GAGCTCTAGTTAGTCGGCGTTACTTCGCTTCATCGCCGGAGGAAATCGCAAAGAGAAATT 222 Query 130 ACGCCAATGATCTGTCGGAATACAACACCGCTGTCCATTCCGTCACAGCTCAGCGCAGGC 189 ||||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 223 ACGCCAACGATCTGTCGGAATACAACACCGCTGTCAACTCCGTCACAGCTCAGCGCAGGC 282 Query 190 ACTATTTGCTGAGGGATGTTTATGATGATATGAAGCTAGATGGTGTGCAGCCTACAGCTG 249 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 283 ACTATTTGCTGAGGGATGTTTATGATGATATGAAGCTTGATGGTGTGCAGCCTACAGCTG 342 Query 250 ATATATTCCATTCTTTTGTTGTGGGAACGATGAAGGGTGCTCGGTTAAGCGATGCTTTCT 309 |||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 343 ATATCTTCCATTCATTTGTCGTGGGAACGATGAAGGGTGCTCGGTTAAGCGATGCGTTCT 402 Query 310 TTTTCCGTGAAGAAATGAAAGCCATGGGAATTGCTCCTGATGTGAACTTGTACAACTTTT 369 ||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 403 TTTTCCGGGAAGAAATGAAAGCCATGGGGATTGCTCCAGATGTGAACTTGTACAACTTTT 462 Query 370 TAATCTCCACATGTGGTAAATGCAAGAATGGAAAGGAGGCAATCCGAGTCTACGACGAGA 429 |||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 463 TAATTTCCACATGTGGGAAATGCAAGAATGGAAAGGAGGCAATCCGAGTCTATGACGAGA 522 Query 430 TGAAGAGATATGATGTAAAACCAAATGGACAGACCTTTGTCTGCCTGCTCAATGCCTGTG 489 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 523 TGAAGAGATATGATGTAAAACCAAATGGACAGACCTTTGTCTGCCTGCTCAATGCCTGCG 582 Query 490 CTGTTTCTGGCCAATTAGATCTTGTGTACGCGATAGTTCGGGATATGACTGCTGCTGGTG 549 ||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 583 CTGTTTCTGGCCAGTTAGATCTTGTATATGCGATAGTTCGGGATATGACTGCTGCTGGTG 642 Query 550 TTGGTTTGAACCAGTTCTGCTATGCGGGACTCATAACTGCACACTTAAACAAGCAGCCTA 609 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 643 TTGGTTTGAACCAGTTCTGCTATGCGGGACTCATAACTGCACACTTAAACAAGCAGCCCA 702 Query 610 GACCAGATAATCTTTCTACCAAGATTCTCGAGTTTGTGGAGCAGTCAAAAGGCTGGTCAG 669 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 703 GACCAGATAATCTTTCTACTAAGATTCTCGAGTTTGTGGAGCAGTCAAAAGGCTGGTCAG 762 Query 670 CAATTGATTCATCAAGGAAGAGTGCAGAAGATGTGATGTTTAGCATCAGTGAAGAAGAGC 729 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 763 CAATTGATTCATCAAGGAAGAGTGCAGAAGATGTGATGTTTAGCATCAGTGAAGAAGAGC 822 Query 730 TGTACAATATTCCAACCGCTGATTATGCCCACAGGACCAGGTTTCTGCAGAGGAATTTGA 789 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 823 TGTACAATATTCCAACCGCTGATTATTCCCACAGGACCAGGTTTCTGCAGAGGAATTTGA 882 Query 790 CCGTCTACCACGTAGCATTCAGTGCTCTCGCTGATATAAAGGATGTAAAAGCAACGGAAG 849 | || || ||||||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 883 CTGTGTATCACGTAGCATTCAGTGCTCTCGCTGATCTGAAGGATGTAAAAGCAACGGAAG 942 Query 850 CTCTTCTTGAGATGCTTAAGAAAGACGGAAAAGACACTGACACTTACTGCGTGCTACAAA 909 |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| Sbjct 943 CTCTTCTTGAGATGCTTAAGAAAGACGGAAAAGATACTGACACTTACTGCATGCTACAAA 1002 Query 910 TTATGAGGTGCTATCTACACTCGCAAGACTTTGAGAATGGTCTCAAAGTGTTTGAAGATT 969 | ||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||| Sbjct 1003 TCATGAGGTGCTATCTACATTCGCAAGACTTTGAGAATGGTCTCAAACTGTTTCAAGATT 1062 Query 970 ACATGAGCGCAGACAAAATCTCTGCCATGGAACTCTACACGACGCTTATAGAAGGAGCTA 1029 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 1063 ACATGAGCGCAGACAAAATCCCTGCCATGGAACTATACACGACGCTTATAGAAGGAGCTA 1122 Query 1030 TGACAGGACACACCGATAATGGAATGAAGATTGCTCAAGACACTCTGGTCAAAATGAACG 1089 |||||||| |||||||||||||||||||||||||||| ||||||||| || ||||||||| Sbjct 1123 TGACAGGATACACCGATAATGGAATGAAGATTGCTCAGGACACTCTGATCCAAATGAACG 1182 Query 1090 AACGCAATTTCTTCTTAGACCCAAGAACTGGAAGCAATCTGTTATTAAAAGCCGCTGGTG 1149 |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 1183 AACGCAATTTCTTCTTAGACCCAAGAACTGGAAGCAATCTGTTACTCAAAGCCGCTGGTG 1242 Query 1150 AAAAGACGGGAGGGTACACAGTTGCAAATATGATATGGGATCTGATGCTAGCTCGGAATA 1209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1243 AAAAGACGGGAGGGTACACAGTTGCAAATATGATATGGGATCTGATGCTAGCTCGGAATA 1302 Query 1210 TTCTACCAACACTAGCTGCTGTTGAAGCTTATTACAAGGGCTTGAAAGAACGTGAAATAC 1269 ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 1303 TTCTACCAACACTAGCTGCTGTTGAAGCTTACTACAAGGGCTTGAAAGAACGCGAAATAC 1362 Query 1270 CAGAGGATGATCCGAGACTGATGTTAGTGACGCGTACATACAATAACTTGCGGCTTAAGG 1329 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 1363 CAGAGGATGATCCGAGACTGATGTTAGTGACGCGAACATACAATAACTTGCGGCTTAGGG 1422 Query 1330 AAGGGACATTACCTAATAGGCGTTAATG----GG-ACCAAGAGGAAGAAAG 1375 |||||||||||||||||||||||||| | || |||||||||||||||| Sbjct 1423 AAGGGACATTACCTAATAGGCGTTAAAGCAAAGGGACCAAGAGGAAGAAAG 1473 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67720535205 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5