BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944293
Length=1375
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35850.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2239 0.0
> AT4G35850.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr4:16983525-16986967 FORWARD LENGTH=1734
Length=1734
Score = 2239 bits (1212), Expect = 0.0
Identities = 1319/1371 (96%), Gaps = 5/1371 (0%)
Strand=Plus/Plus
Query 10 TCACGTGAGCTATGAAGTTCCTCATGCAATCCATTTCTGGTAGGAATCGATCTCTGGTTC 69
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 103 TCACGTGAGCTATGAAGTTCCTCATGCAATCCATTTCTGGGAGGAATCGATCTCTGGTTC 162
Query 70 GAGCTCTAGTTAGTCGGCGTTACTTCGCTTCATCGCCGGAGGAAATCGCAAAGAAAAATT 129
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 163 GAGCTCTAGTTAGTCGGCGTTACTTCGCTTCATCGCCGGAGGAAATCGCAAAGAGAAATT 222
Query 130 ACGCCAATGATCTGTCGGAATACAACACCGCTGTCCATTCCGTCACAGCTCAGCGCAGGC 189
||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 223 ACGCCAACGATCTGTCGGAATACAACACCGCTGTCAACTCCGTCACAGCTCAGCGCAGGC 282
Query 190 ACTATTTGCTGAGGGATGTTTATGATGATATGAAGCTAGATGGTGTGCAGCCTACAGCTG 249
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 283 ACTATTTGCTGAGGGATGTTTATGATGATATGAAGCTTGATGGTGTGCAGCCTACAGCTG 342
Query 250 ATATATTCCATTCTTTTGTTGTGGGAACGATGAAGGGTGCTCGGTTAAGCGATGCTTTCT 309
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 343 ATATCTTCCATTCATTTGTCGTGGGAACGATGAAGGGTGCTCGGTTAAGCGATGCGTTCT 402
Query 310 TTTTCCGTGAAGAAATGAAAGCCATGGGAATTGCTCCTGATGTGAACTTGTACAACTTTT 369
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 403 TTTTCCGGGAAGAAATGAAAGCCATGGGGATTGCTCCAGATGTGAACTTGTACAACTTTT 462
Query 370 TAATCTCCACATGTGGTAAATGCAAGAATGGAAAGGAGGCAATCCGAGTCTACGACGAGA 429
|||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 463 TAATTTCCACATGTGGGAAATGCAAGAATGGAAAGGAGGCAATCCGAGTCTATGACGAGA 522
Query 430 TGAAGAGATATGATGTAAAACCAAATGGACAGACCTTTGTCTGCCTGCTCAATGCCTGTG 489
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 523 TGAAGAGATATGATGTAAAACCAAATGGACAGACCTTTGTCTGCCTGCTCAATGCCTGCG 582
Query 490 CTGTTTCTGGCCAATTAGATCTTGTGTACGCGATAGTTCGGGATATGACTGCTGCTGGTG 549
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 583 CTGTTTCTGGCCAGTTAGATCTTGTATATGCGATAGTTCGGGATATGACTGCTGCTGGTG 642
Query 550 TTGGTTTGAACCAGTTCTGCTATGCGGGACTCATAACTGCACACTTAAACAAGCAGCCTA 609
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 643 TTGGTTTGAACCAGTTCTGCTATGCGGGACTCATAACTGCACACTTAAACAAGCAGCCCA 702
Query 610 GACCAGATAATCTTTCTACCAAGATTCTCGAGTTTGTGGAGCAGTCAAAAGGCTGGTCAG 669
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GACCAGATAATCTTTCTACTAAGATTCTCGAGTTTGTGGAGCAGTCAAAAGGCTGGTCAG 762
Query 670 CAATTGATTCATCAAGGAAGAGTGCAGAAGATGTGATGTTTAGCATCAGTGAAGAAGAGC 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 CAATTGATTCATCAAGGAAGAGTGCAGAAGATGTGATGTTTAGCATCAGTGAAGAAGAGC 822
Query 730 TGTACAATATTCCAACCGCTGATTATGCCCACAGGACCAGGTTTCTGCAGAGGAATTTGA 789
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 823 TGTACAATATTCCAACCGCTGATTATTCCCACAGGACCAGGTTTCTGCAGAGGAATTTGA 882
Query 790 CCGTCTACCACGTAGCATTCAGTGCTCTCGCTGATATAAAGGATGTAAAAGCAACGGAAG 849
| || || ||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 883 CTGTGTATCACGTAGCATTCAGTGCTCTCGCTGATCTGAAGGATGTAAAAGCAACGGAAG 942
Query 850 CTCTTCTTGAGATGCTTAAGAAAGACGGAAAAGACACTGACACTTACTGCGTGCTACAAA 909
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 943 CTCTTCTTGAGATGCTTAAGAAAGACGGAAAAGATACTGACACTTACTGCATGCTACAAA 1002
Query 910 TTATGAGGTGCTATCTACACTCGCAAGACTTTGAGAATGGTCTCAAAGTGTTTGAAGATT 969
| ||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1003 TCATGAGGTGCTATCTACATTCGCAAGACTTTGAGAATGGTCTCAAACTGTTTCAAGATT 1062
Query 970 ACATGAGCGCAGACAAAATCTCTGCCATGGAACTCTACACGACGCTTATAGAAGGAGCTA 1029
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1063 ACATGAGCGCAGACAAAATCCCTGCCATGGAACTATACACGACGCTTATAGAAGGAGCTA 1122
Query 1030 TGACAGGACACACCGATAATGGAATGAAGATTGCTCAAGACACTCTGGTCAAAATGAACG 1089
|||||||| |||||||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 1123 TGACAGGATACACCGATAATGGAATGAAGATTGCTCAGGACACTCTGATCCAAATGAACG 1182
Query 1090 AACGCAATTTCTTCTTAGACCCAAGAACTGGAAGCAATCTGTTATTAAAAGCCGCTGGTG 1149
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1183 AACGCAATTTCTTCTTAGACCCAAGAACTGGAAGCAATCTGTTACTCAAAGCCGCTGGTG 1242
Query 1150 AAAAGACGGGAGGGTACACAGTTGCAAATATGATATGGGATCTGATGCTAGCTCGGAATA 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 AAAAGACGGGAGGGTACACAGTTGCAAATATGATATGGGATCTGATGCTAGCTCGGAATA 1302
Query 1210 TTCTACCAACACTAGCTGCTGTTGAAGCTTATTACAAGGGCTTGAAAGAACGTGAAATAC 1269
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1303 TTCTACCAACACTAGCTGCTGTTGAAGCTTACTACAAGGGCTTGAAAGAACGCGAAATAC 1362
Query 1270 CAGAGGATGATCCGAGACTGATGTTAGTGACGCGTACATACAATAACTTGCGGCTTAAGG 1329
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1363 CAGAGGATGATCCGAGACTGATGTTAGTGACGCGAACATACAATAACTTGCGGCTTAGGG 1422
Query 1330 AAGGGACATTACCTAATAGGCGTTAATG----GG-ACCAAGAGGAAGAAAG 1375
|||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct 1423 AAGGGACATTACCTAATAGGCGTTAAAGCAAAGGGACCAAGAGGAAGAAAG 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67720535205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5