BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944301

Length=524
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G35785.5 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   414    3e-115


> AT4G35785.5 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr4:16952963-16955277 REVERSE LENGTH=1326
Length=1326

 Score =  414 bits (224),  Expect = 3e-115
 Identities = 243/252 (96%), Gaps = 2/252 (1%)
 Strand=Plus/Plus

Query  154  GAAGTGAAGTTGAAAACCCTGGTACCACTCTATATGTAACTGGCCTATCTACAAGAGTCA  213
            ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct  383  GAAGTGAAGTTGAAAACCCTGGTACCACTCTCTATGTGACTGGCCTATCTACAAGAGTCA  442

Query  214  CTGACAAGGATCTTGAAGCACATTTCGCCAAGGAAGGAAAGGTTGCGTCTTGTTTTCTTG  273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  443  CTGACAAGGATCTTGAAGCACATTTCGCCAAGGAAGGAAAGGTTGCGTCTTGTTTTCTTG  502

Query  274  TGATGGAGCCACGCACCCGTGTGTCTCGTGGTTTTGCCTTTGTTACAATG-GATAGCGTT  332
            |||||||||| ||||||||||||||||||||||||||||||||||||||| |  ||| ||
Sbjct  503  TGATGGAGCCGCGCACCCGTGTGTCTCGTGGTTTTGCCTTTGTTACAATGAGC-AGCCTT  561

Query  333  AAAGATGCTGAGCGGTGCATTAAATATCTCAACCAGTCTGTTCTAGAAGGCCGATACATA  392
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  562  AAAGATGCTGAGCGGTGCATTAAATATCTCAACCAGTCTGTACTAGAAGGCCGATACATA  621

Query  393  ACTGTCGAAAGG  404
            ||||| ||||||
Sbjct  622  ACTGTGGAAAGG  633


 Score =  167 bits (90),  Expect = 1e-40
 Identities = 109/117 (93%), Gaps = 5/117 (4%)
 Strand=Plus/Plus

Query  3    ACCTCTGTTTCTTTC-GCAATGGCGGATTCTCCTC---GAAGAAGGGATTCACGATCTCC  58
            ||||||||||| ||| |||||||||||||||||||   ||||||||||||||||||||||
Sbjct  133  ACCTCTGTTTC-TTCGGCAATGGCGGATTCTCCTCAAAGAAGAAGGGATTCACGATCTCC  191

Query  59   TTCACCCCGAAAAGAACGAGCTAGATCCAGGTCCAGGTCTAGATCCAGGTCAAGATC  115
            |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct  192  TTCACCCCGAAAAGAACGAGCTAGATCCAGATCCAGGTCTAGGTCCAGGTCTAGATC  248



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25066839353


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5