BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg944302

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G35785.5 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) fami...   501    2e-141


> AT4G35785.5 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family 
protein | chr4:16952963-16955277 REVERSE LENGTH=1326
Length=1326

 Score =  501 bits (271),  Expect = 2e-141
 Identities = 297/309 (96%), Gaps = 3/309 (1%)
 Strand=Plus/Plus

Query  20    GATCGAGATGGCCGTAGCAGTCGAGGGAGGCACTATGATCGTGATGATTATAGAGACCGT  79
             |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  869   GATCGAGAAGGCCGTAGCAGTCGAGGGAGGCACTATGATCGTGATGATTACAGAGACCGT  928

Query  80    AGGTCACCAAGACGCGACTATTCACCTCGTGATGAAAGAAGGTCTAGAAGAGATCGGTCT  139
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  929   AGGTCACCAAGACGCGACTATTCACCTCGTGATGAAAGAAGGTCTAGAAGAGATCGGTCT  988

Query  140   TACTCTCCTCATGgaagaagctcagaaagaagatcagagagaaggtcggagaggtcagag  199
             ||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||
Sbjct  989   TACTCTCCTCATGGAAGAAGCCCAGAGAGAAGATCAGAGAGAAGGTCTGAGAGGTCAGAG  1048

Query  200   agaagGTATGAACCCCGTGGCTCGAGATGACCTGTTT-CATCCTCTTT-ACAAAGGATTC  257
             ||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||
Sbjct  1049  AGAAGGTATGAACCCCGTGGCTCGAGATGACCTGTTTTCATCCT-TTTGACAAAGGATTC  1107

Query  258   AACAACAACTCTGTTGATTTAGGTTGTGTAATTGATCATCCGTAAAATAGCACAAAGATT  317
             || |||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  1108  AAAAACTTCTCTGTTGATTTAGGTTGTGTAATTGATCATCCTTAAAATAGCACAAAGATT  1167

Query  318   CTGTCAGGC  326
             |||||||||
Sbjct  1168  CTGTCAGGC  1176



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15231127947


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5