BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944303
Length=229
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35783.1 | Symbols: RTFL6, DVL17 | ROTUNDIFOLIA like 6 | chr... 313 5e-85
> AT4G35783.1 | Symbols: RTFL6, DVL17 | ROTUNDIFOLIA like 6 | chr4:16952406-16952800
FORWARD LENGTH=395
Length=395
Score = 313 bits (169), Expect = 5e-85
Identities = 195/207 (94%), Gaps = 3/207 (1%)
Strand=Plus/Plus
Query 3 AAAGACAAGAGAACAATTATGGGGCAATGCTCATCGACGACGAAGATGAGGAGAAAGAGG 62
||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 189 AAAGAGAAGAGAACAATTATGGGGCAATGCTCATCGGCGACAAAGATGAGGAGAAAGAGG 248
Query 63 AAAAGGGAAGAAGAAGGTTGCAGAGAATCAATGGAGAGGA--A-TAAAGGATGTTTAGCT 119
||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||
Sbjct 249 AAAAGGGAAGAAGAATGTTGCAGAGAATCAATGGAGAGGAGGAATAAAGGATGTTTAGCC 308
Query 120 ATGGTGAAGGAGAGGCGTTCTAGGTTTTATATCGCCAGAAGATGTATTCTTATGTTACTT 179
|||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 309 ATGGTGAAGGAGAGACGTTCTAGGTTTTATATAGCTAGAAGATGTATTCTTATGTTGCTT 368
Query 180 TGTTGGCACAAATACGCCAATTCTTGA 206
|||||||||||||||||||||||||||
Sbjct 369 TGTTGGCACAAATACGCCAATTCTTGA 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10304888545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5