BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg944317
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
AT4G35680.1 | Symbols: | Arabidopsis protein of unknown functi... 1334 0.0
> AT4G35680.1 | Symbols: | Arabidopsis protein of unknown function
(DUF241) | chr4:16917749-16920008 FORWARD LENGTH=1960
Length=1960
Score = 1334 bits (722), Expect = 0.0
Identities = 871/942 (92%), Gaps = 13/942 (1%)
Strand=Plus/Plus
Query 13 GAAAAAACATGGAAGGTTTAGATTTGGTCTTCTTGTCTGATCAAACCACACACCAACCGG 72
||||||| ||||||||| | |||| |||||||||||| |||||||||||||||||||||
Sbjct 183 GAAAAAA-ATGGAAGGTCTCGATTCAGTCTTCTTGTCTAATCAAACCACACACCAACCGG 241
Query 73 TTCGATCTTTGAGTCTTCCTTCAAGAATCCATCCACTCTCTGTTAAGA-TCAGAGCAGCC 131
|||||||| |||||||||||||||||||||||||||||||||||| | ||||| ||||
Sbjct 242 TTCGATCTGCGAGTCTTCCTTCAAGAATCCATCCACTCTCTGTTAA-ACTCAGAACAGCT 300
Query 132 TTGAACCGGCTCAGTTTCTGGCGGAGATCTTCTTCCTCAATCTCGATATCCGCTTCGTTT 191
|||| |||||||||| ||||||||||||||||||||||||||||| | || |||||||||
Sbjct 301 TTGAGCCGGCTCAGTATCTGGCGGAGATCTTCTTCCTCAATCTCGGTTTCAGCTTCGTTT 360
Query 192 GGGTATGAGACGGTTCTCGTTGGACTCGTGGACCTCACTGAGCTCTACAGTTGCGTGCAT 251
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 361 GGGTATGAGACGGTTCTCGTTGGACTCGTGAACCTCACTGAGCTCTACGGTTGCGTGCAT 420
Query 252 GAGCTACTTGAGTCTCCTTACGTGAAACACACTCTTCTTCATCACCAGAAAGGGAAACAA 311
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 421 GAGCTACTTGAGTCTCCTTACGTGAAACACACTCTTCTTCATCACCAGGAAGGG--A-AA 477
Query 312 CTTCTGGAAGATTCTTTAGATGGATCTGTTCTGTTGCTCGACGTGTATGAGGCCACAAGG 371
|||||||| || |||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 478 CTTCTGGACGAATCTTTAGATGGATCTGTTCTGTTGCTCGACGTGTATGAGGGGACACGG 537
Query 372 GAGGTGATTGTAGCGATGAGAGAACACGTGACGAATCTCAAATCTGCTCTTCGTAGGAAA 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GAGGTGATTGTAGCGATGAGAGAACACGTGACGAATCTCAAATCTGCTCTTCGTAGGAAA 597
Query 432 GGAAGCGTAGAGAAGGAGGCGAAAGCATACGTTAACTTGCGGAAGAAGGCAAAGAAAGAA 491
|| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 598 GGTAGCTTAGAGAAGGAGGCGAAAGCATACTTTAACTTGCGGAAGAAGGCAAAGAAAGAA 657
Query 492 ATCTCTAAACAGATCAATGCACTCAAGAAAATGGAAACTAGAGATATTTCCACCAACATA 551
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 658 ATCTCTAAACAGATTAATGCACTCAAGAAAATGGAAACCAGAGATATTTCCACCAACACA 717
Query 552 GATCACGATTCAACGATAGCATCCACGATTGTTCTGAGAGAGACAATTGAATTCACTGTC 611
||||| |||||| ||||||||||||||| |||||||||||||||||| || ||||||||
Sbjct 718 GATCAAGATTCAGCGATAGCATCCACGAGTGTTCTGAGAGAGACAATCCAAATCACTGTC 777
Query 612 TCGATTTTCAGACATCTTTTGTTGTTCCTATCAACAATACCACCACCACCATCTCCAACG 671
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 778 TCGATGTTCAGACATCTTTTGTTGTTCCTATCAACAATACCACCACCACCATCGCC--CG 835
Query 672 aaaaaaaTCAAGACCACCATTGGGTTTTTGCCTTTTCCTTTCGTATCGTCGTCATTATCA 731
|| | ||||||| ||||| ||| ||||| | |||||||||||||| | |||||||||
Sbjct 836 -CAATATTCAAGACTACCATAGGGCTTTTGTCGATTCCTTTCGTATCGCCATCATTATCA 894
Query 732 GATAAATCTCTGAATCTGATAAAAGAAATGAAGAGTCTTGATGAAGTTTTTCTGGGTTCT 791
||||||||||||| ||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 895 GATAAATCTCTGATTCTGATAAAGGAAATGAAGAGTCTTGATGATGTCTTTCTGGGTTCT 954
Query 792 ATTTTGGATCCGAGTAAAACCTTT-TTCGAAGTCGAGACAA-GGCAGAAGGAGAAGATGA 849
||||||||| |||| |||| |||| |||||||| || |||| || |||| ||||||||||
Sbjct 955 ATTTTGGATTCGAG-AAAAACTTTATTCGAAGTAGAAACAATGG-AGAACGAGAAGATGA 1012
Query 850 GGAGAGATGTAGTTGAAGATGGTTTTCGTGATCTGGAGGCAGAACTGGACTCTGTTTCCA 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 GGAGAGATGTAGTTGAAGATGGTTTTCGTGATCTGGAGGCAGAACTGGACTCTGTTTCCA 1072
Query 910 AGTCTTTAGTTAAAAACAGAGTTTTGTTCCTTAACATCCTCA 951
||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1073 AGTGTCTAGTTAAAAACAGAGTTTTGTTCCTTAACATCCTCA 1114
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48375483561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5